View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6130_low_7 (Length: 231)
Name: NF6130_low_7
Description: NF6130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6130_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9286889 - 9287110
Alignment:
| Q |
1 |
ccaaatcaaacacaactatactatagaagtaaagtgaggcaatgactggtgtaacaagtaaaatacggatgattcattgctaaaaatcagtaacataaat |
100 |
Q |
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| T |
9286889 |
ccaaatcaaacacaactatactatagaagtaaagtgaggcgatgactggtgtaacaagtaaaatactgatgattcattgctaaaaatcagtaacataaat |
9286988 |
T |
|
| Q |
101 |
cagactacataaaccagtaagccatagatgaaaatcataaaattgaatagtcaacttcggaccatgcattctccaaacaagtcgaagtaaacgttgaata |
200 |
Q |
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| T |
9286989 |
cagactacataaaccagtaagccatagatgaaaatcataaaattgaatagtcaacttcggaccatgcattctccaaacaagtcgaagtaaacgttgaata |
9287088 |
T |
|
| Q |
201 |
gttcagggcagagacaacttag |
222 |
Q |
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|||||||||||| ||||||||| |
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| T |
9287089 |
gttcagggcagaaacaacttag |
9287110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 9298233 - 9298392
Alignment:
| Q |
1 |
ccaaatcaaacacaactatactatagaagtaaagtgaggcaatgactggtgtaacaagtaaaatacggatgattcattgctaaaaatcagtaacataaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
9298233 |
ccaaatcaaacacaactatactatagaagtaaagtgaggcgatgactggtgtagcaagtaaaatactgatgattcattgctaaaaatcagaaacataaat |
9298332 |
T |
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| Q |
101 |
cagactacataaaccagtaagccatagatgaaaatcataaaattgaatagtcaacttcgg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||| |
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| T |
9298333 |
cagactacataaaccagtaagccatagatgaaaatcataaaaatcaatggtaaacttcgg |
9298392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 7724466 - 7724545
Alignment:
| Q |
78 |
tgctaaaaatcagtaacataaatcagactacataaaccagtaagccatagatgaaaatcataaaattgaatagtcaactt |
157 |
Q |
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||||||||| ||| |||| |||| |||||| | ||| |||||| |||||||||||||||||||| || ||||||||||| |
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| T |
7724466 |
tgctaaaaaccagcaacaaaaataagactatacaaatcagtaaatcatagatgaaaatcataaaaatgtatagtcaactt |
7724545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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