View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_1 (Length: 1043)

Name: NF6131_high_1
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_1
NF6131_high_1
[»] chr8 (12 HSPs)
chr8 (647-849)||(2931067-2931269)
chr8 (647-849)||(3011498-3011700)
chr8 (647-850)||(37796567-37796770)
chr8 (647-818)||(2947751-2947922)
chr8 (647-850)||(2921718-2921921)
chr8 (846-925)||(2930955-2931030)
chr8 (927-999)||(2930760-2930831)
chr8 (880-924)||(2947603-2947647)
chr8 (596-644)||(2931991-2932038)
chr8 (849-924)||(3011740-3011814)
chr8 (880-925)||(2921578-2921623)
chr8 (932-999)||(3011944-3012010)
[»] chr6 (2 HSPs)
chr6 (647-851)||(4915561-4915765)
chr6 (880-924)||(4915830-4915874)
[»] chr3 (1 HSPs)
chr3 (647-849)||(1505813-1506015)
[»] chr2 (1 HSPs)
chr2 (647-850)||(28025565-28025768)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 2e-67; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 647 - 849
Target Start/End: Complemental strand, 2931269 - 2931067
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  2931269 ttctatggagagagaataaatgagtacaaagaggaattgaaaacaattggagttatgttcaattgtgaggaagcatgtgaatttattggaaaagaactaa 2931170  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||  |||||||| |||| | ||| ||| | ||||||||||||||    
T  2931169 tgtctcgtgctgcttctttctcattaagtaggagtcatgttcttttgattcttaacttcgtccaatatatccggacaaaccttcttcctttggacaattt 2931070  T
Q  847 tgt 849  Q
    |||    
T  2931069 tgt 2931067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 647 - 849
Target Start/End: Original strand, 3011498 - 3011700
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| || |    
T  3011498 ttctatggggatagaataaatgaatacaaagaggagttgaaaacaattggagtgatgttcaattgtgaggaagcatgtggattcattggaagagagctca 3011597  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| ||||| ||||| |||||  |||| || ||| |||||||||||||||||||||| ||||||||||||   |||| |||| | ||||||||||||||    
T  3011598 tgtctcgtgcagcttcattctcactaagcaggagtgatgttcttttgatgcttaacttcatccaatatctcaagaaaagtcttcttcctttggacaattt 3011697  T
Q  847 tgt 849  Q
    |||    
T  3011698 tgt 3011700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 647 - 850
Target Start/End: Complemental strand, 37796770 - 37796567
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||| |||||| |    
T  37796770 ttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgtaaattcattggaagagaactga 37796671  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| || ||  |||| ||| |||||||||  | |||||| |||||||||||||| || |||||||||||| | | || |||| | || |||||||| ||    
T  37796670 tgtctcgcgcatcttccttcactttaagtaagaatcatgtccttttgatgcttaaattcatccaatatctcaggagaagtcttctcccattggacaaatt 37796571  T
Q  847 tgtg 850  Q
    ||||    
T  37796570 tgtg 37796567  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 647 - 818
Target Start/End: Complemental strand, 2947922 - 2947751
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||| |||||||||| ||||||||| ||||| |||| | ||||||||| |||  | |||| | ||| |||| | |||||||||| ||| ||||    
T  2947922 ttctatggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagtgaggtttgagtgtgtggaagtatgttatttcattggaagagagctaa 2947823  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctcc 818  Q
    |||| ||||| ||||||||||||||||  || |  |||||||||| |||||||||||| |||||||||||||    
T  2947822 tgtctcgtgcggcttctttctctttaaccaggaaccatgttctttggatgcttaacttcatccaatatctcc 2947751  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 647 - 850
Target Start/End: Complemental strand, 2921921 - 2921718
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||| ||||||| ||||||| ||||  |||||||||||||||||||||||||||||| || ||||||| |||||||  | ||||| ||||| ||||| |    
T  2921921 ttctacggggataaaataaataagtatgaagaggagttgaaaacaattggagtgatgtccagttgtgaggaagcatgcaatttcatcggaaaggaactta 2921822  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| | |||  |||  | | ||||||| |  | ||||||| |||| ||||||||||| |||||||||||| | |||| |||| | ||| ||||||| ||    
T  2921821 tgtctcatgcatctttctccgctttaagcaagaatcatgttattttaatgcttaacttcatccaatatctcagtaaaagtcttcttcctctggacaaatt 2921722  T
Q  847 tgtg 850  Q
    ||||    
T  2921721 tgtg 2921718  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 846 - 925
Target Start/End: Complemental strand, 2931030 - 2930955
Alignment:
Q  846 ttgtggtcttaagtcttctgtgggatcggtattaattgaatgattcaggatggcaagttgcatcacaaattagtgatatc 925  Q
    ||||||||||| | || ||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||    
T  2931030 ttgtggtcttaggcctcctgtgggatcggtatt----gaatgactcaggatggcaagttgcatcacaaattagtgatatc 2930955  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 927 - 999
Target Start/End: Complemental strand, 2930831 - 2930760
Alignment:
Q  927 ccttaaaatttggcctcattgaccactgaggctgatgtttttgataatggaatgcataagacacttgaatgcc 999  Q
    |||| ||||||||| ||||||||| ||||||||| | |||| ||||||||||||||| |||||||||||||||    
T  2930831 ccttcaaatttggcttcattgaccgctgaggctgttctttt-gataatggaatgcatcagacacttgaatgcc 2930760  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 880 - 924
Target Start/End: Complemental strand, 2947647 - 2947603
Alignment:
Q  880 attgaatgattcaggatggcaagttgcatcacaaattagtgatat 924  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  2947647 attgaatgattccggatggcaagttgcatcacaaattagtgatat 2947603  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 644
Target Start/End: Complemental strand, 2932038 - 2931991
Alignment:
Q  596 gaacaaaacatttggatggtgcagcaaaccagttttttatgccagaaag 644  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2932038 gaacaaaacatttagatg-tgcagcaaaccagttttttatgccagaaag 2931991  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 849 - 924
Target Start/End: Original strand, 3011740 - 3011814
Alignment:
Q  849 tggtcttaagtcttctgtgggatcggtattaattgaatgattcaggatggcaagttg---catcacaaattagtgatat 924  Q
    |||||||| |||| ||||||||||||||||    ||||||||| |||||||||||||   |||||||||||||||||||    
T  3011740 tggtcttaggtctcctgtgggatcggtatt----gaatgattccggatggcaagttgtatcatcacaaattagtgatat 3011814  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 880 - 925
Target Start/End: Complemental strand, 2921623 - 2921578
Alignment:
Q  880 attgaatgattcaggatggcaagttgcatcacaaattagtgatatc 925  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||    
T  2921623 attgaatgattccggatggcaagttgcatcccaaattagtaatatc 2921578  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 932 - 999
Target Start/End: Original strand, 3011944 - 3012010
Alignment:
Q  932 aaatttggcctcattgaccactgaggctgatgtttttgataatggaatgcataagacacttgaatgcc 999  Q
    |||||||||||| |||||  ||||||||| | |||| ||||||||| ||||| |||||||||||||||    
T  3011944 aaatttggcctctttgacagctgaggctgttctttt-gataatggagtgcatcagacacttgaatgcc 3012010  T

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Target: chr6 (Bit Score: 109; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 647 - 851
Target Start/End: Original strand, 4915561 - 4915765
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| |||||||| ||||| ||||    
T  4915561 ttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagtgatgttcgattatgaggaagcatgtgagttcattgggaaagagctaa 4915660  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||  ||||| |||||| |||||||||| |  |||||||||||||||||||||||||  |||||||||||| | |||| |||| | ||||| ||||| ||    
T  4915661 tgtgtcgtgcggcttctctctctttaagaaagagtcatgttcttttgatgcttaactccatccaatatctcaggaaaagtcttcttcctttcgacaaatt 4915760  T
Q  847 tgtgg 851  Q
    |||||    
T  4915761 tgtgg 4915765  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 924
Target Start/End: Original strand, 4915830 - 4915874
Alignment:
Q  880 attgaatgattcaggatggcaagttgcatcacaaattagtgatat 924  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||    
T  4915830 attgaatggttcagaatggcaagttgcatcacagattagtgatat 4915874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 647 - 849
Target Start/End: Original strand, 1505813 - 1506015
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||| ||| |||||||||||||||||| ||| |||||||||| | | ||||| ||||||| || |||| |||||||||| ||||||| || ||||||||    
T  1505813 ttctacgggaatagaataaatgagtacacagaagagttgaaaatagtcggagttatgttcagttatgaggaagcatgtgacttcattgcaagagaactaa 1505912  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||  | ||||  ||| | ||||||||||| ||    
T  1505913 tgtctcgtgctgcttctttctctttaagaggaagtcatgttcttttgatgcttaacttcatccaatatcttaggaaaagccttcttcctttggacaactt 1506012  T
Q  847 tgt 849  Q
    |||    
T  1506013 tgt 1506015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 647 - 850
Target Start/End: Complemental strand, 28025768 - 28025565
Alignment:
Q  647 ttctatggggatagaataaatgagtacaaagaggagttgaaaacaattggagtgatgttcaattgtgagaaagcatgtgaattcattggaaaagaactaa 746  Q
    ||||||||||||||||||||  ||||  |||| |||||||||||  | |||||||||| || ||||||| |||||||    |||||||||| |||||| |    
T  28025768 ttctatggggatagaataaacaagtatgaagaagagttgaaaactgtaggagtgatgtccagttgtgaggaagcatgcagtttcattggaagagaactga 28025669  T
Q  747 tgtcccgtgctgcttctttctctttaagtagaagtcatgttcttttgatgcttaactttatccaatatctccgaaaaaatcttatacctttggacaattt 846  Q
    |||| |||||  ||||  |  || |||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| | || |||||||| ||    
T  28025668 tgtctcgtgcatcttccgttactctaagtaaaaatcatgttcttttgatgcttaacttcatccaatatctcaggaaaagtcttctcccgttggacaaatt 28025569  T
Q  847 tgtg 850  Q
    ||||    
T  28025568 tgtg 28025565  T

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