View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_109 (Length: 254)
Name: NF6131_high_109
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_109 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 28264882 - 28264654
Alignment:
| Q |
5 |
tcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgacaaag |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28264882 |
tcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgataaag |
28264783 |
T |
|
| Q |
105 |
gtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaaaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264782 |
gtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaaaat |
28264683 |
T |
|
| Q |
205 |
agcacttggcttggcctctggtgtgcttt |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28264682 |
agcacttggcttggcctctggtgtgcttt |
28264654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 28294701 - 28294469
Alignment:
| Q |
1 |
aggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
28294701 |
aggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacataggaatcttgtgaagcttttgggttggtgccatgac |
28294602 |
T |
|
| Q |
101 |
aaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcaca |
200 |
Q |
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| T |
28294601 |
aaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcaca |
28294502 |
T |
|
| Q |
201 |
aaatagcacttggcttggcctctggtgtgcttt |
233 |
Q |
| |
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||||||| ||||| ||||| |||||| |||||| |
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| T |
28294501 |
aaatagctcttggattggcttctggtttgcttt |
28294469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 28304899 - 28304673
Alignment:
| Q |
5 |
tcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgacaaag |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | || |||||||||||||||| |
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| T |
28304899 |
tcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacataggaatcttgtgaagctcttaggctggtgccatgacaaag |
28304800 |
T |
|
| Q |
105 |
gtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaaaat |
204 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |
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| T |
28304799 |
gtgagtttctacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaat |
28304700 |
T |
|
| Q |
205 |
agcacttggcttggcctctggtgtgct |
231 |
Q |
| |
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| | ||||| |||||||||||| |||| |
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| T |
28304699 |
aactcttggattggcctctggtttgct |
28304673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 28288854 - 28289068
Alignment:
| Q |
5 |
tcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgacaaag |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
28288854 |
tcaagacaagggaagaaagagtatgtaactgaagttaaagttattagccagctgagacataggaatcttgtgaagctcttaggatggtgccatgacaaag |
28288953 |
T |
|
| Q |
105 |
gtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaaaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||| || ||||| |
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| T |
28288954 |
gtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttcttggagtgtaagacataaaat |
28289053 |
T |
|
| Q |
205 |
agcacttggcttggc |
219 |
Q |
| |
|
||| ||||| ||||| |
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| T |
28289054 |
agctcttggattggc |
28289068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 28278986 - 28279217
Alignment:
| Q |
2 |
ggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgaca |
101 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||||||| | | ||||||| | |||||||||||| | | || ||||||||||| | |
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| T |
28278986 |
ggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcccattgagacaccggaatcttgtgaagttgttaggttggtgccatgaaa |
28279085 |
T |
|
| Q |
102 |
aaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaa |
201 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| | ||||||| |||||| | |||||||||| |
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| T |
28279086 |
aaggtgagtttcttcttgtttatgagtttatgcctaacggtagcctggattctcatttatttggtaaaagaatacctctttcttggagtctaaggcacaa |
28279185 |
T |
|
| Q |
202 |
aatagcacttggcttggcctctggtgtgcttt |
233 |
Q |
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||||||||||| ||||| ||||||||||||| |
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| T |
28279186 |
aatagcacttgaattggcatctggtgtgcttt |
28279217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 28342110 - 28342030
Alignment:
| Q |
89 |
tggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaa |
169 |
Q |
| |
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||||| ||||| ||| ||||| || ||||||||||||| | |||||| ||||| |||||||||| |||| ||||||||||| |
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| T |
28342110 |
tggtgtcatgaaaaaagtgagcttttacttgtttatgaatacatgcctaatggaagtcttgattatcatctatttggtaaa |
28342030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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