View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_111 (Length: 253)
Name: NF6131_high_111
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_111 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 28265305 - 28265064
Alignment:
| Q |
11 |
cataggattttctgcttcaataggtaacataagagaattaaatactcttttgtcatgggaatttaattccactttggagaaaagtgatgatagtaatagt |
110 |
Q |
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| T |
28265305 |
cataggattttctgcttcaataggtaacataagagaattaaataatcttttgtcatgggaatttaattccaatttggagaaaagtgatgatagtaatagt |
28265206 |
T |
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| Q |
111 |
aaagagacaagattagttgtgatactaaccgtctctttaggggttgtaattataccagcggtagcattagtagcatatgcattactaaagaggaaaagaa |
210 |
Q |
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| T |
28265205 |
aaagatacaagattagttgtgatactaacagtctctttaggggctgtaattataggagtgggagcattggtagcatatgtaatactaaagaggaaaagag |
28265106 |
T |
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| Q |
211 |
agagaagtgaaaagcaaaaggaagaggctatgcatttgacttc |
253 |
Q |
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| T |
28265105 |
ag-gaagtgaaaagcaaaaggaagaggctatgcatttgacttc |
28265064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 28305291 - 28305081
Alignment:
| Q |
43 |
gagaattaaatactcttttgtcatgggaatttaattccactttggagaaaagtgatgatagtaatagtaaagagacaagattagttgtgatactaaccgt |
142 |
Q |
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| T |
28305291 |
gagaagtaaataatcttttgtcatgggaatttaattccaatttggagaaaagtgatgatagtaatagtaaagatacaagattagttgtgatactaacagt |
28305192 |
T |
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| Q |
143 |
ctctttaggggttgtaattataccagcggtagcattagtagcatatgcattactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatg |
242 |
Q |
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| T |
28305191 |
ctctttaggggctgtaattataggagtgggagcattggtagcatatgtaatactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatg |
28305092 |
T |
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| Q |
243 |
catttgacttc |
253 |
Q |
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| T |
28305091 |
catttgacttc |
28305081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 28295088 - 28294879
Alignment:
| Q |
44 |
agaattaaatactcttttgtcatgggaatttaattccactttggagaaaagtgatgatagtaatagtaaagagacaagattagttgtgatactaaccgtc |
143 |
Q |
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| T |
28295088 |
agaattaaattatcttttgtcatgggaattcaactccactttggccacaagtggtgatagtaaaacaaaagagacaagattagttataatactaacggtt |
28294989 |
T |
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| Q |
144 |
tctttaggggttgtaattataccagcggtagcattagtagcatatgcattactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgc |
243 |
Q |
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| T |
28294988 |
tcttgtggggttatagttataggagtgggagcattagtagcatacgcattattttggaggaaaagaaagagaagtaataagcaaaaggaagaggctatgc |
28294889 |
T |
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| Q |
244 |
atttgacttc |
253 |
Q |
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| T |
28294888 |
atttgacttc |
28294879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 28288604 - 28288666
Alignment:
| Q |
185 |
atatgcattactaaagaggaaaagaaagagaagtgaaaagcaaaaggaagaggctatgcattt |
247 |
Q |
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| T |
28288604 |
atatgcattactttggaggaaaataaagagaagtaaaaagaaaaaggaagaggctatgcattt |
28288666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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