View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_112 (Length: 251)
Name: NF6131_high_112
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_112 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 5686077 - 5685834
Alignment:
| Q |
1 |
gtccaatataaatcaaaaccactcatttccaattatcatctttcattattgacatggatgcatagtaacactatcattgtacaacataaatttaccactc |
100 |
Q |
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| T |
5686077 |
gtccaatataaatcaaaaccactcatttccaattatcatctttcattattcacatggatgcatagtagcactatcattgtacaacataa-tataccactc |
5685979 |
T |
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| Q |
101 |
tttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaacttggcccagacatatagtcttcgc |
200 |
Q |
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| T |
5685978 |
tttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaacttggcccagacatatagtcttcac |
5685879 |
T |
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| Q |
201 |
tcttcagcaacttttgttcaagtattgaaataatattcatctcac |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5685878 |
tcttcagcaacttttgttcaagtattgaaataatattcatatcac |
5685834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 5697859 - 5697709
Alignment:
| Q |
1 |
gtccaatataaatcaaaaccactcatttccaattatcatctttcattattgacatggatgcatagtaacactatcattgtacaacataaatttaccactc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5697859 |
gtccaatataaatccaaaccactcatttccaattatcatctttcattattcacatggatgcatagtaacactatcattgtacaacataaatttaccactc |
5697760 |
T |
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| Q |
101 |
tttaataaaacatttggattatggttctaaattcttacatttccacacatt |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5697759 |
tttaataaaacatttggattatggttctaaattcttacatttccacacatt |
5697709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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