View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_113 (Length: 251)
Name: NF6131_high_113
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_113 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43852901 - 43852655
Alignment:
| Q |
1 |
cttagattctcctgaacgattcgtcattcaattcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggaaggaggtt |
100 |
Q |
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| T |
43852901 |
cttagattctcctgaacgattcgtcattcaattcatttgggaggtaatagtgtcacaatataatctcaagagacgaaatttaaatccctggagggaggtt |
43852802 |
T |
|
| Q |
101 |
atataattgtcattaattagtgtcacttcgactaataaaaactttcatcttccttgttctttttt-----nnnnnnnnncaagaagagattaagaatata |
195 |
Q |
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| T |
43852801 |
atataattgtcattaattagtgtcacttcgactaataaaaactttcatcttccatgttctttttttaaaataaaaaaaaaaaaaagagattaagaatata |
43852702 |
T |
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| Q |
196 |
tatgatcttatttcaagttgttttcactttatttcaatgagaataat |
242 |
Q |
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| T |
43852701 |
tatgatcttatttcaagttgttttcactttatttcaatgagaataat |
43852655 |
T |
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