View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_high_114 (Length: 251)
Name: NF6131_high_114
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_114 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40867016 - 40866776
Alignment:
| Q |
1 |
tttgcatgaaaagaaaggtggcaatgagaacaaaacacaaaagagagagtgccatgtaggatagaatggataaagcagtcagaactcagaatggtaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40867016 |
tttgcatgaaaagaaaggtggcaatgagaacaaaacacaaaagagagagtgccatgtaggatagaatggataaagcagtcagaactcagaatggtaaaga |
40866917 |
T |
|
| Q |
101 |
gagcttgtgatgcatgaagggaattggatttctactatttatagagaatctggtcaatgttaccaactttgacataccaaagatgaaaataaaaactatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40866916 |
gagcttgtgatgcatgaagggaattggatttctactatttatagagaatctggtcaatgttaccaactttgacataccaaagatgaaaataaaaactatt |
40866817 |
T |
|
| Q |
201 |
cacatttggaataaagagtaattttgataccattgtctctg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40866816 |
cacatttggaataaagagtaattttgataccattgtctctg |
40866776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University