View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_high_120 (Length: 248)
Name: NF6131_high_120
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_120 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 2306175 - 2306421
Alignment:
| Q |
7 |
aagaatataagggaataattttgtagtaataaggggtacacagtaaagaattatttagttagaatatttactgctttacaaatttaaattttgatact-- |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2306175 |
aagaatataagggaataattttgtagtaatacagggtacacagtaaagaattctttagttagaatatttactgctttacaaatttaaattt-gatactat |
2306273 |
T |
|
| Q |
105 |
----ggtcttaaatataagagaannnnnnnnnnaaattaataaaataaatgatgtatttagtttatattatactgtattgtctctctgattttttatata |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2306274 |
atttggtcttaaatataagagaattttttttttaaattaataaaataaatgatgtatttagtttatattatactgtattatctctctgattttttatata |
2306373 |
T |
|
| Q |
201 |
gcaaagtaataaatcttttttacaagatcaagtatttgggtgtttttt |
248 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2306374 |
gcaaagcaataaatcttttttacaagatcaagtattggggtgtttttt |
2306421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 28923057 - 28923085
Alignment:
| Q |
144 |
aataaatgatgtatttagtttatattata |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28923057 |
aataaatgatgtatttagtttatattata |
28923085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 34181597 - 34181569
Alignment:
| Q |
144 |
aataaatgatgtatttagtttatattata |
172 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34181597 |
aataaatgatgtatttagtttatattata |
34181569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University