View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_13 (Length: 559)
Name: NF6131_high_13
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 107 - 544
Target Start/End: Original strand, 37138849 - 37139286
Alignment:
| Q |
107 |
tcagcagctgctgccgctttgaattcaattggccgggaaacaacggcggagatggccgtcgtccgacataactgcgccaccgccattccgcaccaaacca |
206 |
Q |
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| T |
37138849 |
tcagcagctgctgccgctttgaactcaattggccgggaaacaacggcggagatggccgtcgtccgacataactgcgccaccgccattccgcaccaaagca |
37138948 |
T |
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| Q |
207 |
tcgcgtttgacatcttagattgtaagtaaagagttatcttctattccgtttttaaccnnnnnnnnntgtttcgttctttatttagttctgcaagaaatta |
306 |
Q |
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| T |
37138949 |
tcgcgtttgacatcttagattgtaagtaaagagttatcttctattccgtttttaaccaaaaaaaaatgtttcgttctttatttagttctgcaagaaatta |
37139048 |
T |
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| Q |
307 |
tggtttccttgatagtgttcaacaagggtatatttacctgcagaaatttagtttggttaatataaaattgaaatgggtgaaagatagaacaatggattct |
406 |
Q |
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| T |
37139049 |
tggtttccttgatagtgttcaacaagggtatatttacctgcagaaatttagtttggttaatataaaattgaaatgggtgaaagatagaacaatggattct |
37139148 |
T |
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| Q |
407 |
gttgttgttggtaagagggatcttaaggctgctggaatccttgtttcagttatttattcttcttctgaagattatgttcctatttaccgtctttctcgac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37139149 |
gttgttgttggtaagagggatcttaaggctgctggaatccttgtttcagttatttattcttcttctgaagattatgttcctatttaccgtctttctcggc |
37139248 |
T |
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| Q |
507 |
atcgcggacaacttggacttcctgatgaaattaagctt |
544 |
Q |
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| T |
37139249 |
atcgcggacaacttggacttcctgatgaaattaagctt |
37139286 |
T |
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