View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_133 (Length: 241)
Name: NF6131_high_133
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_133 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25738996 - 25738755
Alignment:
| Q |
1 |
tgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatattttt--------------- |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25738996 |
tgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatatttttaaaattctcaacttt |
25738897 |
T |
|
| Q |
86 |
-caacgttttcttcaatttctacaccccc-tcttctttcttatcattcaaaacctcttcactctttgtaaagttgtcaacttttcaatgtcttgctgaat |
183 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25738896 |
tcaacgttttcttcaatttctacacccccctcttctttcttatcattcaaaacctcttcaacctttgtaaagttgtcaacttttcaatgtcttgctgaat |
25738797 |
T |
|
| Q |
184 |
ttgaatactttcaaccaagttatataattgctgaatttcttg |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25738796 |
ttgaatactttcaaccaagttatataattgctgaatttcttg |
25738755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25747401 - 25747160
Alignment:
| Q |
1 |
tgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatattttt--------------- |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25747401 |
tgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatatttttaaaattctcaacttt |
25747302 |
T |
|
| Q |
86 |
-caacgttttcttcaatttctacaccccc-tcttctttcttatcattcaaaacctcttcactctttgtaaagttgtcaacttttcaatgtcttgctgaat |
183 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25747301 |
tcaatgttttcttcaatttctacacccccctcttctttcttatcattcaaaacctcttcaacctttgtaaagttgtcaacttttcaatgtcttgctgaat |
25747202 |
T |
|
| Q |
184 |
ttgaatactttcaaccaagttatataattgctgaatttcttg |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25747201 |
ttgaatactttcaaccaagttatataattgctgaatttcttg |
25747160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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