View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_144 (Length: 238)
Name: NF6131_high_144
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_144 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42800477 - 42800690
Alignment:
| Q |
1 |
aacatttaaaacaaagaagaaatttttagatgataataatgatatttgaaactgaaaagccacttcgggtacactctagaatcttaataaccatagtcat |
100 |
Q |
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| T |
42800477 |
aacatttaaaacaaagaagaaatttttagatgata---------tttgaaactgagaagccacttcgaatacactctagaatcttaataaccatagtcat |
42800567 |
T |
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| Q |
101 |
ataccacttgggtgnnnnnnnnnnnnnnnnttagatattttctccttcaaatggaagaaggctttccttatgaattaatatcttacaacataatatttcg |
200 |
Q |
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| T |
42800568 |
ataccacttgggtgaaaataaaaagaaaaattagatattttctccttcaaatggaagaaggctttccttatgaattaatatcttacaacataatatttcg |
42800667 |
T |
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| Q |
201 |
gctgtaacaccaatgtcctcaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42800668 |
gctgtaacaccaatgtcctcaat |
42800690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 42803457 - 42803558
Alignment:
| Q |
13 |
aaagaagaaatttttagatgataataatgatatttgaaactgaaaagccacttcgggtacactctagaatcttaataaccatagtcatataccacttggg |
112 |
Q |
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| T |
42803457 |
aaagaaggaaattttagatgataatgatgatatttcaaactgagaagccacttcgggtacactctaaaatcttaataaccatggtcatatacctcttggg |
42803556 |
T |
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| Q |
113 |
tg |
114 |
Q |
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|| |
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| T |
42803557 |
tg |
42803558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 42834371 - 42834418
Alignment:
| Q |
137 |
attttctccttcaaatggaagaaggctttccttatgaattaatatctt |
184 |
Q |
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| T |
42834371 |
atttgctcctttaaatggatgaaggctttccttatgaattactatctt |
42834418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 40251659 - 40251709
Alignment:
| Q |
135 |
atattttctccttcaaatggaagaaggctttccttatgaattaatatctta |
185 |
Q |
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|||||| |||||| |||||||||||||||||| |||||||| ||||||||| |
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| T |
40251659 |
atatttgctccttaaaatggaagaaggctttctttatgaatcaatatctta |
40251709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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