View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_145 (Length: 237)
Name: NF6131_high_145
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_145 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 9001887 - 9002077
Alignment:
| Q |
32 |
tctaaccaaagcaaatgatgctcctcaaattgatcgttcattgtatttcacccttagggattcaaaaacacttttcaacgagcagttaaagactaagaga |
131 |
Q |
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| T |
9001887 |
tctaaccaaagcaaatgatgctcctcaaattgatcgttcattgtatttcacccttagggattcaaaaacacttttcaacgagcagttaaagactaagaga |
9001986 |
T |
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| Q |
132 |
atccaggcagatgggataaatgaagaaaaacacaattacgagattaggaaacataataaaaggagacattagataacataccagtcttata |
222 |
Q |
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| T |
9001987 |
atccaggcagatgggataaatgaagaaaaacacaattacgagattaggaaacataataaaaaaagacattagataacataccagtcttata |
9002077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 1601613 - 1601535
Alignment:
| Q |
51 |
gctcctcaaattgatcgttcattgtatttcacccttagggattcaaaaacacttttcaacgagcagttaaagactaaga |
129 |
Q |
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| T |
1601613 |
gctcctcaaactgataattcattataattaacgcttagggattcagaaacccttttcaaggagcagttaaagactaaga |
1601535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 9001060 - 9001094
Alignment:
| Q |
2 |
gcagaggaaaacaattcacaatcaaatacttctaa |
36 |
Q |
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| T |
9001060 |
gcagaggaaaacaattcacaatcaaatacttctaa |
9001094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 8640125 - 8640182
Alignment:
| Q |
103 |
ttttcaacgagcagttaaagactaagagaatccaggcagatgggataaatgaagaaaa |
160 |
Q |
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| T |
8640125 |
ttttcaaggagcagttaaagaccaagacaatctatgcaaatgggatagatgaagaaaa |
8640182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 48363211 - 48363167
Alignment:
| Q |
85 |
ttagggattcaaaaacacttttcaacgagcagttaaagactaaga |
129 |
Q |
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| T |
48363211 |
ttagggattcagaaacccttttcaaggagcagttaaagattaaga |
48363167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 5129472 - 5129512
Alignment:
| Q |
89 |
ggattcaaaaacacttttcaacgagcagttaaagactaaga |
129 |
Q |
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| T |
5129472 |
ggattcaaaaacgcttttcaaggagcagataaagactaaga |
5129512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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