View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_148 (Length: 236)

Name: NF6131_high_148
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_148
NF6131_high_148
[»] chr1 (16 HSPs)
chr1 (16-236)||(52336832-52337050)
chr1 (64-159)||(36437252-36437346)
chr1 (64-160)||(9851864-9851959)
chr1 (67-146)||(17988348-17988427)
chr1 (63-136)||(31181127-31181200)
chr1 (64-157)||(17971416-17971509)
chr1 (64-157)||(46443703-46443795)
chr1 (64-163)||(11435554-11435652)
chr1 (64-131)||(28165205-28165272)
chr1 (64-163)||(28469935-28470033)
chr1 (64-163)||(42745545-42745643)
chr1 (67-163)||(39150228-39150324)
chr1 (64-114)||(31003677-31003727)
chr1 (64-157)||(24547427-24547521)
chr1 (171-228)||(17988123-17988180)
chr1 (64-136)||(27442446-27442518)
[»] chr3 (12 HSPs)
chr3 (16-233)||(47860554-47860771)
chr3 (65-160)||(25295103-25295198)
chr3 (42-150)||(46918524-46918631)
chr3 (62-163)||(32211837-32211938)
chr3 (64-163)||(45261365-45261463)
chr3 (64-137)||(8825432-8825504)
chr3 (74-162)||(17003625-17003712)
chr3 (68-157)||(40344984-40345073)
chr3 (62-125)||(35455307-35455370)
chr3 (64-115)||(43320227-43320278)
chr3 (62-134)||(43105935-43106006)
chr3 (177-228)||(28695674-28695725)
[»] chr6 (8 HSPs)
chr6 (21-234)||(28363742-28363953)
chr6 (64-163)||(606665-606764)
chr6 (64-156)||(180341-180433)
chr6 (64-150)||(1856752-1856838)
chr6 (64-135)||(3611563-3611633)
chr6 (171-220)||(1856872-1856921)
chr6 (171-220)||(12143696-12143745)
chr6 (63-134)||(7633363-7633435)
[»] chr5 (14 HSPs)
chr5 (19-234)||(43441999-43442212)
chr5 (64-150)||(27193012-27193098)
chr5 (65-157)||(3629263-3629355)
chr5 (64-163)||(11691107-11691204)
chr5 (68-163)||(11983629-11983722)
chr5 (68-155)||(19296214-19296300)
chr5 (42-135)||(6688766-6688859)
chr5 (67-163)||(18705003-18705099)
chr5 (62-163)||(4449436-4449539)
chr5 (66-158)||(3257262-3257354)
chr5 (73-226)||(11824469-11824622)
chr5 (66-149)||(10705027-10705109)
chr5 (176-225)||(35547024-35547073)
chr5 (60-124)||(73563-73627)
[»] chr8 (12 HSPs)
chr8 (19-236)||(43594376-43594595)
chr8 (64-163)||(31658854-31658953)
chr8 (64-163)||(36054817-36054916)
chr8 (47-157)||(8251221-8251330)
chr8 (64-150)||(30112486-30112572)
chr8 (64-163)||(1445354-1445453)
chr8 (64-160)||(38209570-38209666)
chr8 (64-115)||(40694233-40694284)
chr8 (65-115)||(2520227-2520277)
chr8 (171-228)||(2520102-2520159)
chr8 (64-133)||(16890349-16890418)
chr8 (68-113)||(30654260-30654305)
[»] chr7 (16 HSPs)
chr7 (19-211)||(9183236-9183429)
chr7 (55-236)||(46572257-46572442)
chr7 (68-163)||(41508105-41508200)
chr7 (42-163)||(46101260-46101381)
chr7 (74-149)||(6549131-6549206)
chr7 (64-156)||(20949074-20949165)
chr7 (62-150)||(37048574-37048662)
chr7 (62-136)||(17757486-17757560)
chr7 (68-115)||(46341502-46341549)
chr7 (64-150)||(10599811-10599897)
chr7 (68-136)||(2195810-2195878)
chr7 (171-218)||(20949194-20949241)
chr7 (100-163)||(34470095-34470158)
chr7 (64-114)||(7307441-7307491)
chr7 (64-121)||(14650189-14650246)
chr7 (68-136)||(12506713-12506781)
[»] scaffold0836 (1 HSPs)
scaffold0836 (64-163)||(3023-3122)
[»] scaffold0088 (2 HSPs)
scaffold0088 (64-163)||(51274-51373)
scaffold0088 (171-228)||(51395-51452)
[»] chr4 (13 HSPs)
chr4 (64-156)||(16572253-16572345)
chr4 (64-163)||(18838753-18838851)
chr4 (80-163)||(31707397-31707480)
chr4 (62-127)||(42312492-42312558)
chr4 (68-150)||(44884412-44884495)
chr4 (62-136)||(25376919-25376993)
chr4 (86-146)||(38216017-38216077)
chr4 (64-115)||(33721711-33721762)
chr4 (171-228)||(18838873-18838931)
chr4 (64-158)||(54863925-54864019)
chr4 (64-157)||(21128097-21128190)
chr4 (171-228)||(31707321-31707378)
chr4 (54-114)||(47231668-47231728)
[»] scaffold1809 (1 HSPs)
scaffold1809 (67-158)||(550-641)
[»] scaffold0024 (1 HSPs)
scaffold0024 (64-163)||(154341-154440)
[»] chr2 (12 HSPs)
chr2 (65-156)||(38214115-38214206)
chr2 (64-157)||(19285881-19285974)
chr2 (64-124)||(3711925-3711984)
chr2 (74-216)||(28650192-28650331)
chr2 (64-163)||(38496474-38496573)
chr2 (65-163)||(39063642-39063740)
chr2 (64-161)||(40442719-40442816)
chr2 (67-163)||(3268802-3268898)
chr2 (67-163)||(3269361-3269457)
chr2 (67-163)||(3269920-3270016)
chr2 (65-161)||(40503877-40503973)
chr2 (171-228)||(21794959-21795016)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 52337050 - 52336832
Alignment:
Q  16 atattttttaaaatatttcttgtgggtttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagac 115  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52337050 atatttttttaaatatttcttgtgggtttttaaaaaaaattgtggccctgtttataagaaaatgtcacatcttttaaggtatagttattgcttaaaa-ac 52336952  T
Q  116 gtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatgagggtatattagtaaaaatatctaaaaagttatattaattaa 215  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||    
T  52336951 atttttatccttcatttaatgattctcttttttatcttagtgggtgta-ttttttatgagggtatattagtaaaaatatctaaaaagttacattaattaa 52336853  T
Q  216 tgattatattggtgttggcct 236  Q
    |||||||||||||||||||||    
T  52336852 tgattatattggtgttggcct 52336832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 36437346 - 36437252
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtggg 159  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||||||  | |||||||||| ||||||||    
T  36437346 tatttataagaaaatgtcacaacttttaagg-atagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattagtggg 36437252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 9851959 - 9851864
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggt 160  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||||||||| | |||||||| ||||||||| ||| |||||||||    
T  9851959 tatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtgggt 9851864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 17988427 - 17988348
Alignment:
Q  67 ttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttt 146  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||| || | |||||||| |||||||||    
T  17988427 ttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatgcttctctttt 17988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 31181200 - 31181127
Alignment:
Q  63 ttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatg 136  Q
    |||||||||||||||||||||| |||||||  ||||||||||| ||||||||| ||||||  ||||||||||||    
T  31181200 ttatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatg 31181127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 17971509 - 17971416
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 157  Q
    |||||||||||||| |||||| ||||||||||||| |||||| ||||||||| ||| || || |||||||||| |  |||||| ||| ||||||    
T  17971509 tatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattagtg 17971416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 46443703 - 46443795
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 157  Q
    |||||||||||||| |||||| |||||||||| || ||||| ||||||| || ||||||||| |||||| ||  ||||||||||||| ||||||    
T  46443703 tatttataagaaaacgtcacaacttttaaggtgtaattattacttaaaaaacttttttatccctcattt-atagttctctttttaatgttagtg 46443795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 11435554 - 11435652
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||||||||| ||| ||||||||| |||||| |||||| || ||| |||| || |||||||| || | |||||||| ||||||| ||||    
T  11435554 tatttataagaaaatgtcacaacttataaggtataattattgtttaaaa-acttttatatcatttatttaatgtttgtttttttaatattagtggatgta 11435652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 28165272 - 28165205
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatt 131  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||||||  |||||| || |||||    
T  28165272 tatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcatt 28165205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 28469935 - 28470033
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||| |||||||||||  ||||||||| |||||||| |||||| | | ||| ||||||| |||||||| ||||||||| ||| || |||||||||    
T  28469935 tatttataaaaaaatgtcacaaattttaaggtgtagttattacttaaatgtcttttctatcctt-atttaatgtttctcttttaaatatttgtgggtgta 28470033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 42745545 - 42745643
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||||||||||||  |||| | ||||| |||||| |||||| || ||||||||| |||||||| ||||  ||||||||| ||||||| ||||    
T  42745545 tatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatac-tttttatccctcatttaaggattgcctttttaatattagtggatgta 42745643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 39150324 - 39150228
Alignment:
Q  67 ttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||| ||||  |||||||||| ||||||||||||||||||| ||| || || | |||||||| || | |||||||| ||| || |||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgta 39150228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 31003727 - 31003677
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaaga 114  Q
    ||||||||||||||||||||| |||||||||| |||||| || ||||||||    
T  31003727 tatttataagaaaatgtcacaacttttaaggtgtagttactgtttaaaaga 31003677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 24547427 - 24547521
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgc-ttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 157  Q
    |||||||||||||||||||||  ||||||| | |||||||| |   |||| || ||| |||||||||||||||| || |||||| ||| ||||||    
T  24547427 tatttataagaaaatgtcacaagttttaagatgtagttattacaaaaaaaaacttttatatccttcatttaatgtttgtcttttcaatattagtg 24547521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 17988180 - 17988123
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 228  Q
    |||||| |||||| |||||| ||| | |||||||||||| |||||||||||| |||||    
T  17988180 atgaggatatatttgtaaaattattttaaaagttatatttattaatgattatcttggt 17988123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 27442518 - 27442446
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatg 136  Q
    ||||||||||||||  ||||| ||||||| ||||| ||| || ||||||||| ||| || || ||||||||||    
T  27442518 tatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatg 27442446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 47860554 - 47860771
Alignment:
Q  16 atattttttaaaatatttcttgtgggtttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagac 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47860554 atattttttaaaatatttcttgtgggtttttaaaaaa-attgtggctttatttataagaaaatgtcacatcttttaaggtatagttattacttaaaagac 47860652  T
Q  116 gtttttatccttcatttaatgattctctttttaatcttagtgggtgta-nnnnnnnatgagggtatattagtaaaaatatctaaaaagttatattaatta 214  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||    
T  47860653 atttttatccttcatttaattattctctttttaatcttagtgggtgtattttttttatgagggtatattagtaaaaatatctaaaaagttacattaatta 47860752  T
Q  215 atgattatattggtgttgg 233  Q
    ||||| |||||||||||||    
T  47860753 atgatcatattggtgttgg 47860771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 25295198 - 25295103
Alignment:
Q  65 atttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggt 160  Q
    |||||||||||||||| ||| |||||||||| || |||||| ||||||||| ||||||||| |||||||||| ||||||||||||| |||||||||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggt 25295103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 46918631 - 46918524
Alignment:
Q  42 tttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattct 141  Q
    |||||||||||  || ||| | |||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||  | |    
T  46918631 tttttaaaaaaagttttggtcctatttataagaaaatgtcacaatttttaagg-atagttattgcttaaaagacttttttatccttcatttaatgtctgt 46918533  T
Q  142 ctttttaat 150  Q
    |||||||||    
T  46918532 ctttttaat 46918524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 32211938 - 32211837
Alignment:
Q  62 cttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtg 161  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||| ||| || || | |||||||| || |||||||||| ||||||||||    
T  32211938 cttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagtgggtg 32211839  T
Q  162 ta 163  Q
    ||    
T  32211838 ta 32211837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 45261365 - 45261463
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||| ||| ||| ||||| | |||||||| ||||||||| ||| ||||||||||||    
T  45261365 tatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattagtgggtgta 45261463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 8825504 - 8825432
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatga 137  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  8825504 tatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatga 8825432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 17003712 - 17003625
Alignment:
Q  74 aaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgt 162  Q
    ||||||||||| |||||||||| ||||||||||||||| ||| ||||||||| | |||||||| ||||||||| ||| |||||||||||    
T  17003712 aaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagtgggtgt 17003625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 40345073 - 40344984
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 157  Q
    ||||||||||||||||| |||||||||| |||| ||||||||| |||| ||| || || |||||||||  || |||||||||| ||||||    
T  40345073 tataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattagtg 40344984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 35455307 - 35455370
Alignment:
Q  62 cttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatcc 125  Q
    ||||||||||||||||||||||| |||||||||| || |||||||||||| ||| ||| |||||    
T  35455307 cttatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttctatcc 35455370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 43320278 - 43320227
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagac 115  Q
    ||||||||||||||||||||| |||||||||| | ||||||| |||||||||    
T  43320278 tatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagac 43320227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 43106006 - 43105935
Alignment:
Q  62 cttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaa 134  Q
    |||||||||||||||| |||||| |||||||||| || |||||| ||||||||| ||| || || ||||||||    
T  43106006 cttatttataagaaaaagtcacaacttttaaggt-tatttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 28695674 - 28695725
Alignment:
Q  177 gtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 228  Q
    ||||||| ||||||||||  ||||||||| | ||||||||||||||||||||    
T  28695674 gtatatttgtaaaaatattcaaaaagttacactaattaatgattatattggt 28695725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 28363742 - 28363953
Alignment:
Q  21 ttttaaaatatttcttgtgggtttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttt 120  Q
    |||| ||||||||||||||||||||| ||||| ||| ||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||  ||||    
T  28363742 tttttaaatatttcttgtgggttttttaaaaaaattatggccctgtttataagaaaacgtcacatcttttaaggtatagttattgattaaaaga-atttt 28363840  T
Q  121 tatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatgagggtatattagtaaaaatatctaaaaagttatattaattaatgatt 220  Q
    |||| ||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  28363841 tatctttcatttaatgattctctttttaatcttagtgggtgtatttttttatgagagtatattagtaaaaatatctaaaaagttatattaattaat-att 28363939  T
Q  221 atattggtgttggc 234  Q
    ||||||||||||||    
T  28363940 atattggtgttggc 28363953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 606764 - 606665
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||||||||| |||||||||| || |||| |||||||| || |||| |||| | ||||||||| | | |||||||| ||||||| ||||    
T  606764 tatttataagaaaatgtcacaacttttaaggtgtacttatagcttaaaatactttttaatcccttatttaatgactgtatttttaatattagtggatgta 606665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 180341 - 180433
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 156  Q
    ||||||||||||||| |||||  ||||||| | ||||||||||||||||||| ||| || || | |||||||| || |||||||||| |||||    
T  180341 tatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagt 180433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 1856752 - 1856838
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtat-agttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 150  Q
    ||||||||| ||||| ||||| |||||||| ||| |||||||| ||||||||| ||| ||||  |||||||||  |||||||||||||    
T  1856752 tatttataaaaaaatatcacaacttttaag-tatcagttattgtttaaaagacttttctatctctcatttaatatttctctttttaat 1856838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 3611563 - 3611633
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaat 135  Q
    ||||||||||||||||| ||| |||| ||||||||||||||| |||||| |  ||| ||||| |||||||||    
T  3611563 tatttataagaaaatgttacaacttt-aaggtatagttattgtttaaaatatttttctatccctcatttaat 3611633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 1856872 - 1856921
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgatt 220  Q
    ||||| ||||||| |||||||||| |||||| ||| ||||||||||||||    
T  1856872 atgagagtatatttgtaaaaatatttaaaaaattacattaattaatgatt 1856921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 12143745 - 12143696
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgatt 220  Q
    |||||||| |||| ||||||||||  ||||||||| ||||||||||||||    
T  12143745 atgagggtgtatttgtaaaaatattcaaaaagttacattaattaatgatt 12143696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 7633435 - 7633363
Alignment:
Q  63 ttatttataagaaaatgtcacatcttttaaggtatagttattgctt-aaaagacgtttttatccttcatttaa 134  Q
    |||||| |||||||||| ||||  ||||||| | |||||||||||| |||||||  ||||| |||||||||||    
T  7633435 ttatttgtaagaaaatgacacaatttttaagatgtagttattgcttaaaaagacagttttacccttcatttaa 7633363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 43441999 - 43442212
Alignment:
Q  19 ttttttaaaatatttcttgtgggtttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtt 118  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||  ||    
T  43441999 tttttttaaatatttcttgtgggtttttaaaaaaaattgtggccctatttataagaaaattttacatcttt-aaggtatagttattgcttaaaagatatt 43442097  T
Q  119 tttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatgagggtatattagtaaaaatatctaaaaagttatattaattaatga 218  Q
    ||||||||||||||||||||| |||||||||||||||||||||||       |||| |||||||| ||||||||||||||||||||| |||||  |||||    
T  43442098 tttatccttcatttaatgattttctttttaatcttagtgggtgta-ttttttatgatggtatattggtaaaaatatctaaaaagttacattaaacaatga 43442196  T
Q  219 ttatattggtgttggc 234  Q
    ||||||||||||||||    
T  43442197 ttatattggtgttggc 43442212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 27193012 - 27193098
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 150  Q
    |||||||||| |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  27193012 tatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatgcatctctttttaat 27193098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 3629355 - 3629263
Alignment:
Q  65 atttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 157  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| ||||| | ||||||||| | | |||||||| ||||||    
T  3629355 atttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatccctaatttaatgactgtatttttaatattagtg 3629263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 11691204 - 11691107
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||  ||||||| ||  |||| |||| |||||||| ||||||||||  || ||||| |||||||||| |||||||||||||||||||| |||||    
T  11691204 tatttataaacaaatgtcgcaattttttaggtgtagttatttcttaaaagac--ttctatccctcatttaatgtttctctttttaatcttagtgagtgta 11691107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 11983722 - 11983629
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||||||   |||||||||| || |||||| ||||||||  |||||| || |||||||||| ||||||||||||| ||||||| ||||    
T  11983722 tataagaaaatgtcaa--cttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgta 11983629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 19296300 - 19296214
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttag 155  Q
    ||||| ||||||||||| ||||||| || ||||||||||||||||||| ||| ||||| | |||||||| ||||| ||||||| ||||    
T  19296300 tataaaaaaatgtcacaacttttaaagtgtagttattgcttaaaagacttttctatccat-atttaatgtttctcattttaatattag 19296214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 6688766 - 6688859
Alignment:
Q  42 tttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaat 135  Q
    |||| |||||||||| ||| | ||  ||||||||||| ||||| |||||||||| ||||||||| ||||||||| ||| ||||| | |||||||    
T  6688766 ttttcaaaaaatattatggtcctaaatataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaat 6688859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 18705003 - 18705099
Alignment:
Q  67 ttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||  ||| | |||||||||| |||||||| |||||||||| |||||| |||| |||||||| || | |||||||| ||| | ||||||    
T  18705003 ttataagaaaacatcataacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgtttttgtttttaatattaataggtgta 18705099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 4449436 - 4449539
Alignment:
Q  62 cttatttataagaaaatgtcacatcttttaag--gtatagttattgcttaaaagacgtttttatccttcattt-aatgattctctttttaatcttagtgg 158  Q
    |||||||||||||||||||||||  |||||||  || || ||||| |||||||||| |||||| || |||||| |||| || |||||||||||||| |||    
T  4449436 cttatttataagaaaatgtcacaatttttaaggtgtgtatttatttcttaaaagactttttta-ccctcatttcaatgtttgtctttttaatcttaatgg 4449534  T
Q  159 gtgta 163  Q
     ||||    
T  4449535 ttgta 4449539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 3257354 - 3257262
Alignment:
Q  66 tttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgg 158  Q
    ||||||||||||| ||||| |||||||||  ||  ||||| ||||||||| ||| ||||  | |||||||| || |||||||||| |||||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactattgtttaaaagacttttctatctcttatttaatgtttgtctttttaatattagtgg 3257262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 11824469 - 11824622
Alignment:
Q  73 gaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnat 172  Q
    |||||||| ||| ||||||| ||||| |||||| ||||||||| ||| ||  | ||||||| ||||| |  ||||| | ||||||| ||||       ||    
T  11824469 gaaaatgttacaacttttaaagtataattattgtttaaaagacttttatacacctcatttactgattattattttattattagtggatgtaactttctat 11824568  T
Q  173 gagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattg 226  Q
     ||| ||||||  ||||||||| |||||||||| || ||||||||||| |||||    
T  11824569 aaggatatatttataaaaatatttaaaaagttaaatcaattaatgattgtattg 11824622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 10705027 - 10705109
Alignment:
Q  66 tttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaa 149  Q
    |||||||||||||||||||  ||||||||| ||||| ||  ||||||||| ||| ||||| | |||||||| || |||||||||    
T  10705027 tttataagaaaatgtcacaatttttaaggtgtagtt-ttatttaaaagacttttctatccctaatttaatgcttgtctttttaa 10705109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 35547073 - 35547024
Alignment:
Q  176 ggtatattagtaaaaatatctaaaaagttatattaattaatgattatatt 225  Q
    |||||||| |||||||||| |||||||||||| ||||||| |||| ||||    
T  35547073 ggtatattcgtaaaaatatttaaaaagttataataattaacgattttatt 35547024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 73563 - 73627
Alignment:
Q  60 gccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatc 124  Q
    |||||| |||||| ||| | ||||| | |||||||| ||||||||||||||||||| ||| ||||    
T  73563 gccttaattataaaaaattatcacaacctttaaggtgtagttattgcttaaaagacttttctatc 73627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 43594595 - 43594376
Alignment:
Q  19 ttttttaaaatatttcttgtgggtttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtt 118  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| || ||    
T  43594595 ttttttaaaatatttcttgtgggttttttaaaaa-attgtggccttatttataagaaaatgtcacatctttttaagtatagttattgcataaaaaacatt 43594497  T
Q  119 tttatccttcatttaatgattctctttttaatct---tagtgggtgta-nnnnnnnatgagggtatattagtaaaaatatctaaaaagttatattaatta 214  Q
    |||||| |||| ||||||||||||||||||||||   |||||||||||        |||||||||||||||||||||||| ||||||||||  |||||||    
T  43594496 tttatctttcacttaatgattctctttttaatcttagtagtgggtgtattttttttatgagggtatattagtaaaaatatttaaaaagtta-cttaatta 43594398  T
Q  215 atgattatattggtgttggcct 236  Q
    ||||||||||||||||||||||    
T  43594397 atgattatattggtgttggcct 43594376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 31658854 - 31658953
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||| ||||| |||||||| | ||||||||| ||||||||| |||||| |||| |||||||| || ||||||||||  |||||| ||||    
T  31658854 tatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagtggatgta 31658953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 36054817 - 36054916
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||| || || | | |||||| || |||||||||| ||||||| ||||    
T  36054817 tatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattagtggatgta 36054916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 8251221 - 8251330
Alignment:
Q  47 aaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttt 146  Q
    |||||||||| ||| | ||||||||||||||| ||||| |||||||||| || |||||||||||||||| |||||  || | |||||||| || ||||||    
T  8251221 aaaaaatatt-tggtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttt 8251319  T
Q  147 taatcttagtg 157  Q
    |||| ||||||    
T  8251320 taatattagtg 8251330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 30112572 - 30112486
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 150  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||||  ||||||||| || |||||||  | ||||||||||    
T  30112572 tatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgtatgtctttttaat 30112486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 1445354 - 1445453
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtat-agttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgt 162  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||| ||| ||| ||||| | |||||||| |||||||||  || |||||| ||||    
T  1445354 tatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccct-atttaatgtttctcttttagatattagtgagtgt 1445452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 38209666 - 38209570
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggt 160  Q
    |||||||||||||| |||||| ||||||||||| | |||||| ||||||||| | | || || |||||||||| |  |||||| ||| |||||||||    
T  38209666 tatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattagtgggt 38209570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 40694233 - 40694284
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagac 115  Q
    ||||||||||||||| ||||| ||||| |||| || ||||||||||||||||    
T  40694233 tatttataagaaaatatcacaactttttaggtgtaattattgcttaaaagac 40694284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 2520277 - 2520227
Alignment:
Q  65 atttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagac 115  Q
    ||||||||||||||||||||  ||||||| | |||||||||||||| ||||    
T  2520277 atttataagaaaatgtcacaaattttaagatgtagttattgcttaagagac 2520227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 2520159 - 2520102
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 228  Q
    |||||| |||||| ||||||||||  ||||||||| |||||||||||| | |||||||    
T  2520159 atgaggatatatttgtaaaaatattcaaaaagttacattaattaatgaatgtattggt 2520102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 16890418 - 16890349
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcattta 133  Q
    |||||||| |||||| ||||| ||||||||||||||||| || || |||||| ||| || |||| |||||    
T  16890418 tatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctaccctttattta 16890349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 30654305 - 30654260
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaag 113  Q
    ||||||||||| ||||| ||||||| || |||||||||||||||||    
T  30654305 tataagaaaatatcacaacttttaaagtgtagttattgcttaaaag 30654260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 9183429 - 9183236
Alignment:
Q  19 ttttttaaaatatttcttgtgggtttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtt 118  Q
    ||||||||||||||| ||| |||||||| | ||  ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  9183429 ttttttaaaatattttttgagggttttttataataattgtggccctgtttataagaaaatgtcacatcttttaaggtatagttattgcttagaagacatt 9183330  T
Q  119 tttatccttcatttaatgattctctttttaatcttagtgggtgta-nnnnnnnatgagggtatattagtaaaaatatctaaaaagttatattaa 211  Q
    ||||||||||||||||||||||||||||| |||||||||||||||         | |||||||||||||||||||||||||||||||| |||||    
T  9183329 tttatccttcatttaatgattctctttttgatcttagtgggtgtatttttttttttagggtatattagtaaaaatatctaaaaagttacattaa 9183236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 46572442 - 46572257
Alignment:
Q  55 ttgtggccttatttataagaaaatgtcacatctttt-aaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatctt 153  Q
    ||||||||| ||| |||||||||| ||||||||||| |||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||    
T  46572442 ttgtggcctaattcataagaaaatatcacatctttttaaggtatagttatttcttaaaagatatttttatccttcatttaatgattctctttttaatttt 46572343  T
Q  154 agtgggtgtannnnnnnatgagggtatat---tagtaaaaatatctaaaaagttatattaattaatgattatattggtgttggcct 236  Q
    |||| |||||       ||||||||||||   || |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46572342 agtgagtgtatttttttatgagggtatattaataataaaaatatctaaaaagttacattaattaatgattatattggtgttggcct 46572257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 41508105 - 41508200
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||| |||||  ||||||||| ||||||||||||||||||| |||||| || | |||||||| || |||||||||| ||||||||||||    
T  41508105 tataagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattagtgggtgta 41508200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 46101381 - 46101260
Alignment:
Q  42 tttttaaaaaatattgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattct 141  Q
    ||||||||||| |   ||| ||||||||||||||||||||| | |||||||| | |||||||| || ||||||| ||| || || ||||||||||||| |    
T  46101381 tttttaaaaaaaaaattggtcttatttataagaaaatgtcataacttttaagttgtagttattactcaaaagacttttctacccctcatttaatgattgt 46101282  T
Q  142 ctttttaatcttagtgggtgta 163  Q
    | ||||||| ||||||| ||||    
T  46101281 cattttaatattagtggatgta 46101260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 6549206 - 6549131
Alignment:
Q  74 aaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaa 149  Q
    ||||| ||||| ||||||||||||||||||| |||||||||  ||||||||||||| |||||| || |||||||||    
T  6549206 aaaatatcacaacttttaaggtatagttatttcttaaaagatttttttatccttcacttaatggttttctttttaa 6549131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 20949074 - 20949165
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 156  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||| ||  ||||||||| | ||||||||  |||||||| ||| |||||    
T  20949074 tatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattagt 20949165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 37048574 - 37048662
Alignment:
Q  62 cttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 150  Q
    ||||||||||||||||| ||||| ||||||| || |||| |||| ||||||||| ||| || |||| |||||||| || ||||||||||    
T  37048574 cttatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaaagacttttctaccctttatttaatgtttatctttttaat 37048662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 17757560 - 17757486
Alignment:
Q  62 cttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatg 136  Q
    |||||||||||||||| | |||| ||||||||||| | |||||||||||||||| |||||| || | ||||||||    
T  17757560 cttatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatg 17757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 46341502 - 46341549
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaagac 115  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagac 46341549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 10599897 - 10599811
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 150  Q
    |||||||||||||| |||||| ||||| ||||| | |||||| || ||| || ||| || ||||||||||||| || ||||||||||    
T  10599897 tatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttcatttaatgtttatctttttaat 10599811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 2195810 - 2195878
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatg 136  Q
    ||||||||||| ||| | |||||||||| ||||||||| ||||||||| ||| ||  ||||||||||||    
T  2195810 tataagaaaatatcataacttttaaggtgtagttattgtttaaaagacttttctactcttcatttaatg 2195878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 20949194 - 20949241
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatga 218  Q
    ||||||||||||| |||||||||| |||||||||| |||||| |||||    
T  20949194 atgagggtatatttgtaaaaatatttaaaaagttacattaatcaatga 20949241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 34470095 - 34470158
Alignment:
Q  100 ttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||| |||||||||  ||||||||| || ||||||| ||||||||||||| |||||| |||||    
T  34470095 ttattacttaaaagaattttttatccctcgtttaatgcttctctttttaatattagtgagtgta 34470158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 7307441 - 7307491
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaaga 114  Q
    ||||||||||||||||||||| ||||||| |  ||||||||| ||||||||    
T  7307441 tatttataagaaaatgtcacaacttttaaagagtagttattgtttaaaaga 7307491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 14650246 - 14650189
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgttttt 121  Q
    |||||||||||||||||||||  ||||||| | || ||||||| |||||||| |||||    
T  14650246 tatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttttt 14650189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 12506713 - 12506781
Alignment:
Q  68 tataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatg 136  Q
    ||||||||||| | ||| |||||||||| ||||||||| | ||||||| ||| ||||| | ||||||||    
T  12506713 tataagaaaatattacaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatg 12506781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 3023 - 3122
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||| ||||| ||||| ||| |||||||||||||| ||||||| ||||    
T  3023 tatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattagtggatgta 3122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 51274 - 51373
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||| |||||||||| |||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||| ||||| ||||||    
T  51274 tatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttagttggtgta 51373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 51395 - 51452
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 228  Q
    ||||||||||| | ||||||||||  |||| |||| |||||||||||||| |||||||    
T  51395 atgagggtataattgtaaaaatattcaaaatgttacattaattaatgattgtattggt 51452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 16572253 - 16572345
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 156  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| |||  ||||||||| ||||||||||| | | |||||||| |||||    
T  16572253 tatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatgactgtatttttaatattagt 16572345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 18838753 - 18838851
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||| ||||||||||| | ||||||||||||| |||||| ||||||||| ||| || || ||||||||||||| |||||||||| ||||||||||||    
T  18838753 tatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta-ccctcatttaatgattatctttttaatattagtgggtgta 18838851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 31707480 - 31707397
Alignment:
Q  80 tcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||| |||||||||| ||||||||||||| ||||| ||| || || | |||||||| || |||||||||| ||||||||||||    
T  31707480 tcacaacttttaaggtgtagttattgcttagaagacttttctaccccttatttaatgtttgtctttttaatattagtgggtgta 31707397  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 42312558 - 42312492
Alignment:
Q  62 cttatttataagaaaatg-tcacatcttttaaggtatagttattgcttaaaagacgtttttatcctt 127  Q
    ||||||||||| |||||  ||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  42312558 cttatttataaaaaaataatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 42312492  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 44884495 - 44884412
Alignment:
Q  68 tataagaaaatgtcaca--tcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaat 150  Q
    |||||||||||||||||  | ||||||||| ||||||||| ||||||||| ||||||||| |||||||||| ||  |||||||||    
T  44884495 tataagaaaatgtcacaacttttttaaggtgtagttattgtttaaaagac-tttttatccctcatttaatgtttgcctttttaat 44884412  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 25376993 - 25376919
Alignment:
Q  62 cttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatg 136  Q
    |||||||| ||||||| ||||||  |||||||||||| |||||| ||||||||| ||| || || ||||||||||    
T  25376993 cttatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatg 25376919  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 38216017 - 38216077
Alignment:
Q  86 cttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttt 146  Q
    ||||||||||||| ||||||| |||||||  ||| |||||||||||||||| || ||||||    
T  38216017 cttttaaggtatatttattgcataaaagatttttctatccttcatttaatgtttgtctttt 38216077  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 33721762 - 33721711
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagac 115  Q
    |||||||||||||||||||||  |||||| || ||||||||| |||||||||    
T  33721762 tatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagac 33721711  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 18838873 - 18838931
Alignment:
Q  171 atgagggtatattagtaaaaatatct-aaaaagttatattaattaatgattatattggt 228  Q
    ||||||||||||| |||||||||  | ||||| ||||||||||||||||||| ||||||    
T  18838873 atgagggtatatttgtaaaaataattcaaaaatttatattaattaatgattacattggt 18838931  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 54863925 - 54864019
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgg 158  Q
    |||||||||||||| |||||| ||||||||||| | |||||| ||||||| | ||| || |  |||||||||| |  |||||| ||| |||||||    
T  54863925 tatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagtgg 54864019  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 21128097 - 21128190
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 157  Q
    ||||||||||||||||||| | ||||||| ||||| |||||  ||||||||| |||  | || |||||| ||| || ||||||| || ||||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttccaaccctcattttatgtttatcttttttatattagtg 21128190  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 31707378 - 31707321
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 228  Q
    ||||||||||||| ||||||||||  ||||||||| | |||||||||| | |||||||    
T  31707378 atgagggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattggt 31707321  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 47231728 - 47231668
Alignment:
Q  54 attgtggccttatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaaga 114  Q
    |||||||  ||||||||||||||||||||   |||||||| |||| |||||| ||||||||    
T  47231728 attgtggttttatttataagaaaatgtcaatacttttaagatatatttattgtttaaaaga 47231668  T

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Target: scaffold1809 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 641 - 550
Alignment:
Q  67 ttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgg 158  Q
    ||||||||||| |||||| | |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||| || ||||||| |||||||    
T  641 ttataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagtgg 550  T

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Target: scaffold0024 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 154341 - 154440
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||| | ||| |||||||||| ||||||||| ||||||||| |||||| | || |||||||| || |||||||||| || |||||||||    
T  154341 tatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattggtgggtgta 154440  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 38214115 - 38214206
Alignment:
Q  65 atttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagt 156  Q
    |||||||||||||  ||||| |||||||||| || |||||| ||||||||| ||| ||||| |||||||||  ||||||||||||| |||||    
T  38214115 atttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattagt 38214206  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 19285881 - 19285974
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtg 157  Q
    |||||||||| || |||||||  ||||||||| |||||||||| |||||||| ||| |||||||||||||||  || |||||| ||| ||||||    
T  19285881 tatttataagtaattgtcacaagttttaaggtgtagttattgcataaaagacttttatatccttcatttaatatttgtcttttcaatattagtg 19285974  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 3711984 - 3711925
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatc 124  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||    
T  3711984 tatttataagaaaatgtcacaacttttaagg-atagttattgtttaaaagacttttttatc 3711925  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 28650331 - 28650192
Alignment:
Q  74 aaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgtannnnnnnatg 173  Q
    ||||||| ||| |||||||||| ||||||||  ||||||||| ||| |||  || |||||||| ||||||||||||| ||||| ||||||       |||    
T  28650331 aaaatgtaacaacttttaaggtgtagttattatttaaaagacttttctatatttaatttaatgcttctctttttaatattagtaggtgta---ttttatg 28650235  T
Q  174 agggtatattagtaaaaatatctaaaaagttatattaattaat 216  Q
    ||||||||||  |||||||||  ||||||||| ||| ||||||    
T  28650234 agggtatattcataaaaatattaaaaaagttaaattcattaat 28650192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 38496474 - 38496573
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    ||||||||||||||||||| |  ||||||||||||||||||| ||||||||| ||| || || | |||||| | || | |||||||| ||||| ||||||    
T  38496474 tatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtaggtgta 38496573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 39063740 - 39063642
Alignment:
Q  65 atttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||||  ||||| |||||||||| || |||||| ||||||||| ||| |||   |||||||||  ||||||||||||| |||||| |||||    
T  39063740 atttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagtgtgtgta 39063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 40442719 - 40442816
Alignment:
Q  64 tatttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtg 161  Q
    ||||||||||||||||||||| |||||||||| || |||||| |||||| || ||| || || | ||||| || || |||||||||| ||||| ||||    
T  40442719 tatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattagtaggtg 40442816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 3268802 - 3268898
Alignment:
Q  67 ttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||| ||||| |||||||||| |||||||||| |||||||| ||| || || | |||||||| || | |||||||| ||| | ||||||    
T  3268802 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgta 3268898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 3269361 - 3269457
Alignment:
Q  67 ttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||| ||||| |||||||||| |||||||||| |||||||| ||| || || | |||||||| || | |||||||| ||| | ||||||    
T  3269361 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgta 3269457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 3269920 - 3270016
Alignment:
Q  67 ttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtgta 163  Q
    |||||||||||| ||||| |||||||||| |||||||||| |||||||| ||| || || | |||||||| || | |||||||| ||| | ||||||    
T  3269920 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgta 3270016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 40503877 - 40503973
Alignment:
Q  65 atttataagaaaatgtcacatcttttaaggtatagttattgcttaaaagacgtttttatccttcatttaatgattctctttttaatcttagtgggtg 161  Q
    |||||||||||||||||||| |||||||||| || |||||| |||||| || ||| || || | ||||| || || |||||||||| ||||| ||||    
T  40503877 atttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattagtaggtg 40503973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 21794959 - 21795016
Alignment:
Q  171 atgagggtatattagtaaaaatatctaaaaagttatattaattaatgattatattggt 228  Q
    ||||||||||||| ||||||||||  ||||||||   ||||| |||||||||||||||    
T  21794959 atgagggtatatttgtaaaaatattcaaaaagtttctttaatcaatgattatattggt 21795016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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