View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_high_150 (Length: 234)
Name: NF6131_high_150
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_150 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 45108621 - 45108418
Alignment:
| Q |
13 |
agcacagatgatacattatttaaatctatgaatgaaacgtccatgtccaacaatgttattaattctaatcttctgaactataatgtttgcatttccaccc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45108621 |
agcacagatgatacattatttaaatctatgaatgaaacgtccatgtccaacaatgttgttaattctaatcttctaaactataatgtttgcatttccaccc |
45108522 |
T |
|
| Q |
113 |
cgcctaatattctctcccatggcatatggggaaaacatgagaccgaagggagtccattcaggtcctctttcccagtatttcttcatcaagtcattctaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45108521 |
cgcctaatattctctcccatggcatatggggaaaacatgagtccgaagggagtccattcaggtcctctttcccagtatttcttcatcaagtcattctaat |
45108422 |
T |
|
| Q |
213 |
ttat |
216 |
Q |
| |
|
|||| |
|
|
| T |
45108421 |
ttat |
45108418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University