View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_163 (Length: 205)

Name: NF6131_high_163
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_163
NF6131_high_163
[»] chr4 (13 HSPs)
chr4 (14-115)||(29893868-29893969)
chr4 (14-115)||(33394966-33395067)
chr4 (14-115)||(50646582-50646683)
chr4 (14-115)||(33394459-33394561)
chr4 (14-115)||(48542341-48542442)
chr4 (14-110)||(40260572-40260669)
chr4 (14-115)||(50646058-50646158)
chr4 (14-115)||(29893343-29893445)
chr4 (14-113)||(44088018-44088117)
chr4 (116-195)||(27134844-27134924)
chr4 (53-115)||(48541396-48541458)
chr4 (18-66)||(43323536-43323584)
chr4 (54-113)||(43326037-43326096)
[»] chr8 (5 HSPs)
chr8 (14-115)||(43139149-43139250)
chr8 (14-115)||(21570941-21571042)
chr8 (14-115)||(21570416-21570518)
chr8 (57-115)||(42840446-42840504)
chr8 (57-117)||(45376207-45376267)
[»] chr1 (12 HSPs)
chr1 (14-115)||(33659912-33660013)
chr1 (14-117)||(28283758-28283861)
chr1 (26-115)||(26244444-26244533)
chr1 (141-195)||(573972-574026)
chr1 (17-115)||(50616003-50616102)
chr1 (17-115)||(50623831-50623930)
chr1 (14-111)||(37335029-37335126)
chr1 (54-114)||(4426247-4426307)
chr1 (39-115)||(10891688-10891764)
chr1 (14-87)||(28284553-28284627)
chr1 (57-115)||(47213884-47213942)
chr1 (57-113)||(45813229-45813284)
[»] chr5 (10 HSPs)
chr5 (14-112)||(38943090-38943188)
chr5 (14-115)||(19033611-19033712)
chr5 (14-78)||(37922737-37922801)
chr5 (14-116)||(19033103-19033206)
chr5 (14-115)||(37923444-37923546)
chr5 (54-115)||(38943658-38943719)
chr5 (116-195)||(8981181-8981260)
chr5 (54-115)||(2331443-2331504)
chr5 (14-110)||(2332282-2332379)
chr5 (57-115)||(10361047-10361105)
[»] chr3 (18 HSPs)
chr3 (14-115)||(27042985-27043086)
chr3 (14-100)||(13648475-13648561)
chr3 (14-115)||(51800951-51801053)
chr3 (14-115)||(10030510-10030611)
chr3 (14-115)||(46416033-46416134)
chr3 (15-115)||(10029994-10030095)
chr3 (14-115)||(10181347-10181449)
chr3 (14-115)||(10257717-10257819)
chr3 (28-115)||(51801463-51801550)
chr3 (55-116)||(13647689-13647750)
chr3 (14-90)||(38507833-38507909)
chr3 (14-115)||(10124915-10125017)
chr3 (14-116)||(38506981-38507084)
chr3 (54-113)||(27043912-27043971)
chr3 (14-108)||(33464155-33464250)
chr3 (54-112)||(33464956-33465014)
chr3 (57-111)||(34266839-34266893)
chr3 (57-113)||(46961671-46961727)
[»] chr7 (6 HSPs)
chr7 (14-112)||(28870369-28870467)
chr7 (14-115)||(7475025-7475126)
chr7 (14-116)||(47514390-47514484)
chr7 (14-115)||(47513543-47513645)
chr7 (54-115)||(28869836-28869897)
chr7 (54-115)||(44185801-44185862)
[»] chr2 (7 HSPs)
chr2 (14-116)||(38825925-38826027)
chr2 (14-109)||(40133701-40133796)
chr2 (41-115)||(1156930-1157004)
chr2 (41-115)||(2283628-2283702)
chr2 (14-116)||(1156131-1156234)
chr2 (14-78)||(2285576-2285641)
chr2 (54-115)||(40129171-40129232)
[»] scaffold0022 (1 HSPs)
scaffold0022 (14-115)||(60372-60473)
[»] chr6 (5 HSPs)
chr6 (14-115)||(6608404-6608505)
chr6 (116-195)||(2471646-2471725)
chr6 (54-112)||(6606653-6606711)
chr6 (54-115)||(6607605-6607666)
chr6 (57-115)||(29429500-29429558)
[»] scaffold0072 (2 HSPs)
scaffold0072 (14-115)||(16237-16338)
scaffold0072 (54-117)||(17041-17104)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 6e-39; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 29893868 - 29893969
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  29893868 ataaattgaaatataaaatgcaggatgtaaatgtaacagcaaataaaataaaattgatctaagatggggcaatttcacaattgccccatgctaaaactcg 29893967  T
Q  114 cc 115  Q
    ||    
T  29893968 cc 29893969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 33394966 - 33395067
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||  ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  33394966 ataaattagaatataaaatgcagggtgtacatgtaacaacaaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaactcg 33395065  T
Q  114 cc 115  Q
    ||    
T  33395066 cc 33395067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 50646582 - 50646683
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||  |||||||||| |||| |||||||||||||| |||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||    
T  50646582 ataaattagaatataaaatacagggtgtacatgtaacagcaaataaaacaaaattgatttaagatggagcaatttcacaattgccccatgctaaaactcg 50646681  T
Q  114 cc 115  Q
    ||    
T  50646682 cc 50646683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 33394561 - 33394459
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||| |||||||||||||  ||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  33394561 ataaattggaatataaaaatgcaggatgtacaactaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactc 33394462  T
Q  113 gcc 115  Q
    |||    
T  33394461 gcc 33394459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 48542341 - 48542442
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||| ||||||||||||||| ||||||| ||| || |||||||| |||||||||||||||| | | | ||||||||||||||||||||||||||||    
T  48542341 ataaattggaatataaaatgcagggtgtacatataatagcaaataaaataaaattgatctaagatggagcagtttcacaattgccccatgctaaaactcg 48542440  T
Q  114 cc 115  Q
    ||    
T  48542441 cc 48542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 40260669 - 40260572
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaac 110  Q
    |||||||| ||||||||| || ||| || |||  ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  40260669 ataaattggaatataaaaatgtagggtggacaactaatagtaaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaac 40260572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 50646158 - 50646058
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||||||||||||| | |||||||||||  ||| ||||||||||||||  ||||| |||||| ||| ||||| |||||||| ||||||||||||||    
T  50646158 ataaattgaaatataaaaatacaggatgtacaattaatagtaaataaaacaa--ttgatttaagatggggcaatttgacaattgctccatgctaaaactc 50646061  T
Q  113 gcc 115  Q
    |||    
T  50646060 gcc 50646058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 29893445 - 29893343
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||| |||||||||||||  ||| |  ||||||||||||||||||||||||| | | ||||| ||||||| ||||| |||||||||    
T  29893445 ataaattggaatataaaaatgcaggatgtacaattaataacaaataaaacaaaattgatctaagatggagcaatttgacaattgtcccatactaaaactc 29893346  T
Q  113 gcc 115  Q
    |||    
T  29893345 gcc 29893343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 44088018 - 44088117
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||  ||||||||||||||| ||||||||||  |  |||||||||||||||| ||||||||   | ||||| |||||||||||||| |||||||||    
T  44088018 ataaattagaatataaaatgcagggtgtacatgtagtaacaaataaaacaaaattgttctaagatgaagcaatttgacaattgccccatgttaaaactcg 44088117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 27134844 - 27134924
Alignment:
Q  116 ctcataaacagaacaggcnnnnnnngagaccacctgtgcctcaaaaaa-gataaggccaccgcttctgtccctttgctact 195  Q
    ||||||||||||||||||       |||||||||| |||||||||||| || |||||||||||||||||| ||||||||||    
T  27134844 ctcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaaagacaaggccaccgcttctgtctctttgctact 27134924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 48541458 - 48541396
Alignment:
Q  53 taaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    ||||||||||||||||||||||| || | | ||||| ||||||  ||||||||||||||||||    
T  48541458 taaataaaacaaaattgatctaatatggagcaatttgacaattaacccatgctaaaactcgcc 48541396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 43323584 - 43323536
Alignment:
Q  18 attgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaa 66  Q
    |||||||||||||||||||| |||| |||||| || |||||||||||||    
T  43323584 attgaaatataaaatgcagggtgtaaatgtaatagcaaataaaacaaaa 43323536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 43326037 - 43326096
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||||||||||||| |||||| ||  | ||| ||||||| ||||||||||||||||    
T  43326037 aaataaaacaaaattgatttaagatgggacagtttgacaattgtcccatgctaaaactcg 43326096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 43139250 - 43139149
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  43139250 ataaattggaatataaaatgcagggtgtacatctaacagcaaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaactcg 43139151  T
Q  114 cc 115  Q
    ||    
T  43139150 cc 43139149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 21570941 - 21571042
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    ||||||| ||||||||||| |||| ||||||| |||||  |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  21570941 ataaattaaaatataaaatacagggtgtacatataacaacaaataaaacaaaattgatctaaaatagggcaatttcacaaatgccccatgctaaaactcg 21571040  T
Q  114 cc 115  Q
    ||    
T  21571041 cc 21571042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 21570518 - 21570416
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||| |||||||||||||  ||| || ||||||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  21570518 ataaattggaatataaaaatgcaggatgtacaactaatagcaaataaaacaaaattgatctaagattgggcaatttgacaattgccccatactaaaactc 21570419  T
Q  113 gcc 115  Q
    |||    
T  21570418 gcc 21570416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 42840504 - 42840446
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||||||||||||||||| | | ||||| ||||||  ||||||||||||||||||    
T  42840504 taaaacaaaattgatctaagatggagaaatttgacaatttgcccatgctaaaactcgcc 42840446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 45376207 - 45376267
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgccct 117  Q
    |||||||||||||||||||||| ||| ||||| | ||||  ||||| ||||||||||||||    
T  45376207 taaaacaaaattgatctaagatggggaaatttgataatttgcccatactaaaactcgccct 45376267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 33659912 - 33660013
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  33659912 ataaattggaatataaaatgcagggtgtacatgtaacaacaaataaaacaaaattgatctaagattgggcaatttcacaattgccccatgctaaaactcg 33660011  T
Q  114 cc 115  Q
    ||    
T  33660012 cc 33660013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 28283861 - 28283758
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  28283861 ataaattggaatataaaatgcaggatgtacatgtaacaacaaataaaataaaattgatctaagatgggacaatttcacaattgccccatgctaaaactcg 28283762  T
Q  114 ccct 117  Q
    ||||    
T  28283761 ccct 28283758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 26244444 - 26244533
Alignment:
Q  26 ataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  26244444 ataaaatgcagggtgtacatgtaacaacaaataaaacaaaattgatctaagatggggcaatttcacaattaccccatgctaaaactcgcc 26244533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 573972 - 574026
Alignment:
Q  141 gagaccacctgtgcctcaaaaaagataaggccaccgcttctgtccctttgctact 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  573972 gagaccacctgtgcctcaaaaaagataaggccaccgcttctgtctctttgctact 574026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 50616003 - 50616102
Alignment:
Q  17 aattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    ||||||||||||||| |||| | ||||||  ||| |  ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||    
T  50616003 aattgaaatataaaaatgcaaggtgtacagctaataccaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatactaaaactcgcc 50616102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 50623831 - 50623930
Alignment:
Q  17 aattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    ||||||||||||||| |||| | ||||||  ||| |  ||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||    
T  50623831 aattgaaatataaaaatgcaaggtgtacagctaataccaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatactaaaactcgcc 50623930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 37335029 - 37335126
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaact 111  Q
    |||||||  ||||||||||||| |||||| |||||  || ||||||||||||||||||||||||| | | ||||| | |||||||||||||| |||||    
T  37335029 ataaattagaatataaaatgcatgatgtatatgtagtagcaaataaaacaaaattgatctaagatggagcaatttgagaattgccccatgctgaaact 37335126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 4426307 - 4426247
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgc 114  Q
    ||||||||||||||||||||||||| | |||||||  ||||||||| ||||||||||||||    
T  4426307 aaataaaacaaaattgatctaagatggagtaatttgtcaattgccctatgctaaaactcgc 4426247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 10891688 - 10891764
Alignment:
Q  39 tgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||| |||| | || |||| |||||||||||||||||| ||| |||||  | |||||||||||||||||| ||||    
T  10891688 tgtacaagtaataatagataagacaaaattgatctaagatggggaaatttttccattgccccatgctaaaacccgcc 10891764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 28284553 - 28284627
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatt 87  Q
    |||||||||||||||||| |||| | || |||  ||| || ||||||||||||||||||||||||| ||| ||||    
T  28284553 ataaattgaaatataaaaatgcaaggtggacagctaatagcaaataaaacaaaattgatctaagatggggcaatt 28284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 47213942 - 47213884
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    ||||||||||||||| |||||| | | ||||| ||||||  ||||||||||||||||||    
T  47213942 taaaacaaaattgatataagatggagaaatttgacaatttacccatgctaaaactcgcc 47213884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 45813229 - 45813284
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||||||||||||||||| ||  ||||| ||||||  ||||||||||||||||    
T  45813229 taaaacaaaattgatctaagat-ggaaaatttgacaatttacccatgctaaaactcg 45813284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 38943188 - 38943090
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  38943188 ataaattggaatataaaatgcagggtgtacatgtaacaacaaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaactc 38943090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 19033611 - 19033712
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||| ||  |||||||||||||| |||||||||||||||    
T  19033611 ataaattgaaatataaaatgtagggtgtacatgtaacagcaaataaaataaaattgatctaagatgggacaatttcacaattgctccatgctaaaactcg 19033710  T
Q  114 cc 115  Q
    ||    
T  19033711 cc 19033712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 37922801 - 37922737
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagat 78  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  37922801 ataaattgaaatataaaatgcagggtgtacatataacagcaaataaaacaaaattgatctaagat 37922737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 19033206 - 19033103
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    ||||||| |||||||||| | |||||||||||  ||| || ||||||||||||||||||||||||| ||| | ||| ||||||||||| |||||||||||    
T  19033206 ataaattaaaatataaaaatacaggatgtacaactaatagcaaataaaacaaaattgatctaagatggggcagtttgacaattgccccttgctaaaactc 19033107  T
Q  113 gccc 116  Q
    ||||    
T  19033106 gccc 19033103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 37923444 - 37923546
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||| || ||| || |||  ||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  37923444 ataaattggaatataaaaatgtagggtggacaactaatagcaaataaaacaaaattgatctaagatggggaaatttgacaattgccccatgctaaaactc 37923543  T
Q  113 gcc 115  Q
    |||    
T  37923544 gcc 37923546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 38943658 - 38943719
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  38943658 aaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactcgcc 38943719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 8981260 - 8981181
Alignment:
Q  116 ctcataaacagaacaggcnnnnnnngagaccacctgtgcctcaaaaaagataaggccaccgcttctgtccctttgctact 195  Q
    ||||||||||||||||||       |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  8981260 ctcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaagacaaggccaccgcttctgtctctttgctact 8981181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 2331504 - 2331443
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  2331504 aaataaaataaaattgatctaagttggggcaatttcacaattgccccatgctaaaactcgcc 2331443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 2332282 - 2332379
Alignment:
Q  14 ataaattgaaatataaaat-gcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaac 110  Q
    |||||||| |||||||||| | ||||||||||  ||| || |||||||||||||||||| |||||| | | ||||| |||||||||||||||||||||    
T  2332282 ataaattggaatataaaattgtaggatgtacaactaatagcaaataaaacaaaattgatttaagatggagcaatttaacaattgccccatgctaaaac 2332379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 10361047 - 10361105
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||||||||||||||||| ||  ||||| ||||||  ||||||||||||||||||    
T  10361047 taaaacaaaattgatctaagatgggaaaatttgacaatttgcccatgctaaaactcgcc 10361105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 27043086 - 27042985
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||    
T  27043086 ataaattggagtataaaatgcaggatgtacatgtaacagcaaataaaacaaaattgatttaagatggagcaatttcacaattgccccatgctaaaactcg 27042987  T
Q  114 cc 115  Q
    ||    
T  27042986 cc 27042985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 13648475 - 13648561
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgcccc 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  13648475 ataaattgaaatataaaatgcagggtgtacatgtaacaggaaataaaacaaaattgatctaagatggggcaatttcacaattgcccc 13648561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 51801053 - 51800951
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaa-ttgccccatgctaaaactc 112  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||    
T  51801053 ataaattgaaatataaaatgcagggtgtacatgtaacaacaaataaaacaaaattgatctaagatggggcaatttcacaatttgcctcatgctaaaactc 51800954  T
Q  113 gcc 115  Q
    |||    
T  51800953 gcc 51800951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 10030510 - 10030611
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||  ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  10030510 ataaattagaatataaaatgcagggtgtacatgtaacatcaaataaaacaaaattgatctaagatggggcaatttcacaattgtcccatgctaaaactcg 10030609  T
Q  114 cc 115  Q
    ||    
T  10030610 cc 10030611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 46416134 - 46416033
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| ||||    ||||||||||||||||||||||    
T  46416134 ataaattggaatataaaatgcaggatgtacatgtaacagcaaataaaacaaaattgatttaagatggggcaattgtgaaattgccccatgctaaaactcg 46416035  T
Q  114 cc 115  Q
    ||    
T  46416034 cc 46416033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 10030095 - 10029994
Alignment:
Q  15 taaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    ||||||| ||||||||| | |||||||||||  ||| || ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  10030095 taaattggaatataaaaattcaggatgtacaactaatagcaaataaaacaaaattgatctaagatagagcaatttgacaattgccccatgctaaaactcg 10029996  T
Q  114 cc 115  Q
    ||    
T  10029995 cc 10029994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10181449 - 10181347
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||| | |||||||||||  ||| |||||||||||||||||||||||||||| | | ||||| |||| ||||||||||||||||||    
T  10181449 ataaattggaatataaaaattcaggatgtacaactaatagtaaataaaacaaaattgatctaagatggagcaatttgacaactgccccatgctaaaactc 10181350  T
Q  113 gcc 115  Q
    |||    
T  10181349 gcc 10181347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10257819 - 10257717
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||| | |||||||||||  ||| || ||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||    
T  10257819 ataaattggaatataaaaattcaggatgtacaactaatagcaaataaaacaaaattgatctaagatagagcaatttgacaattgcctcatgctaaaactc 10257720  T
Q  113 gcc 115  Q
    |||    
T  10257719 gcc 10257717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 51801463 - 51801550
Alignment:
Q  28 aaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    ||||||||| |||||||  ||| |  ||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||    
T  51801463 aaaatgcagaatgtacaattaataacaaataaaacaaaattgatctaagattgagtaatttgacaattgtcccatgctaaaactcgcc 51801550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 13647750 - 13647689
Alignment:
Q  55 aataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgccc 116  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||    
T  13647750 aataaaacaaaattgatctaagatggggcaatttgacaattgccccatgttaaaactcgccc 13647689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 38507833 - 38507909
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttca 90  Q
    |||||||| ||||||||||| | | |||| ||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  38507833 ataaattggaatataaaatgtaaggtgtaaatgtaacagcaaataaaacaaaattgatctaagatggggcaatttca 38507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10125017 - 10124915
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||| | |||||||||||  ||| || |||||||| ||||||||||||| |||||  ||||| |||||||||| |||| |||||||    
T  10125017 ataaattggaatataaaaattcaggatgtacaactaatagcaaataaaataaaattgatctaaaataggacaatttgacaattgcccaatgccaaaactc 10124918  T
Q  113 gcc 115  Q
    |||    
T  10124917 gcc 10124915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 38507084 - 38506981
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatt-tcacaattgccccatgctaaaact 111  Q
    |||||||| ||||||||| |||||| || |||  ||| || |||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||    
T  38507084 ataaattggaatataaaaatgcagggtggacaactaatagcaaataaaacaaaattgatcttagatggggcaattgtca-aattgccccatgctaaaact 38506986  T
Q  112 cgccc 116  Q
    |||||    
T  38506985 cgccc 38506981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 27043912 - 27043971
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    ||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||| ||||    
T  27043912 aaataaaacaaaattgatctaagatagggcaatttgacaattaccccatactaaatctcg 27043971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 33464250 - 33464155
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattg-ccccatgctaaa 108  Q
    |||||||  ||||||||||| ||||||||||  ||| || |||||||||||||||||| |||||| ||| ||||| || |||| ||||||||||||    
T  33464250 ataaattagaatataaaatgtaggatgtacaactaatagcaaataaaacaaaattgatttaagatggggcaatttaacgattgcccccatgctaaa 33464155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 33464956 - 33465014
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| |||||||||||||| | ||| ||||| |||||||||||||||||||||||    
T  33464956 aaataaaataaaattgatctaagttggggcaatttgacaattgccccatgctaaaactc 33465014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 34266893 - 34266839
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaact 111  Q
    |||||||||||||||||||||| ||| ||||| ||||||  ||||||||||||||    
T  34266893 taaaacaaaattgatctaagatggggaaatttgacaatttgcccatgctaaaact 34266839  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 46961671 - 46961727
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    ||||| |||||||||||||||| ||  ||||| ||||||  ||||||||||||||||    
T  46961671 taaaataaaattgatctaagatgggaaaatttgacaattcacccatgctaaaactcg 46961727  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 28870369 - 28870467
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||    
T  28870369 ataaattggaatataaaatgcagggtgtacatgtaacaacaaataaaacaaaattgatctaagatggagcaatttcacaattaccccatgctaaaactc 28870467  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 7475126 - 7475025
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||  |||||||||| || | |||| ||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  7475126 ataaattagaatataaaatacatggtgtatatgtaacagcaaataaaacaaaattaatctaagatggggtaatttcataattgccccatgctaaaactcg 7475027  T
Q  114 cc 115  Q
    ||    
T  7475026 cc 7475025  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 47514390 - 47514484
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||        |||||||||||||||||||||||    
T  47514390 ataaattagaatataaaatgcagggtgtacatgtaacagcaaataaaacaaaattgatctaagatgggg--------caattgccccatgctaaaactcg 47514481  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 47513645 - 47513543
Alignment:
Q  14 ataaattgaaatataaaa-tgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||||||| ||||| || ||| || |||  ||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  47513645 ataaattgaaatgtaaaaatgtagggtggacaactaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactc 47513546  T
Q  113 gcc 115  Q
    |||    
T  47513545 gcc 47513543  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 28869897 - 28869836
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  28869897 aaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactcgcc 28869836  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 44185801 - 44185862
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||| |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||    
T  44185801 aaataaaataaaattgatctaagatgggacaatttgacaattgccccatgctaaaactcgcc 44185862  T

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Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 38825925 - 38826027
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||   | ||||||||||| ||||||||| ||||||||    
T  38825925 ataaattgaaatataaaatgcagggtgtacatgtaacatcaaataaaacaaaatttatctaagatgaagcaatttcacaatcgccccatgcaaaaactcg 38826024  T
Q  114 ccc 116  Q
    |||    
T  38826025 ccc 38826027  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 40133701 - 40133796
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaa 109  Q
    |||||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||| ||| |||||||||| |||||| ||||||||    
T  40133701 ataaattggaatataaaatgcagggtgtacatctaacagcaaataaaacaaaattgatttaagatggggcaatttcacaactgccccgtgctaaaa 40133796  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 1156930 - 1157004
Alignment:
Q  41 tacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||| |||| || ||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||    
T  1156930 tacaagtaatagcaaataaaacaaaattgatctaagttgggataatttcacaattgtcccatgctaaaactcgcc 1157004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 2283702 - 2283628
Alignment:
Q  41 tacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||| |||| || ||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||    
T  2283702 tacaagtaatagcaaataaaacaaaattgatctaagttggggcaatttcacaattgctccatgctaaaactcgcc 2283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 1156234 - 1156131
Alignment:
Q  14 ataaattgaaatataaaatgc-aggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    |||||||||||||||||||   || |||||||  ||| || |||||||||||||||||| |||||| |   ||||| ||||||||||||||||||||| |    
T  1156234 ataaattgaaatataaaattatagaatgtacaattaatagcaaataaaacaaaattgatttaagatggaacaatttaacaattgccccatgctaaaaccc 1156135  T
Q  113 gccc 116  Q
    ||||    
T  1156134 gccc 1156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 2285576 - 2285641
Alignment:
Q  14 ataaattgaaatataaaat-gcaggatgtacatgtaacagtaaataaaacaaaattgatctaagat 78  Q
    ||||||||||||||||||| | ||||||||||  ||| || |||||||||||||||||| ||||||    
T  2285576 ataaattgaaatataaaattgtaggatgtacaactaatagcaaataaaacaaaattgatttaagat 2285641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 40129232 - 40129171
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||| |||||||||||||||| | | ||||| |||||| |||||||||||||| ||||    
T  40129232 aaataaaagaaaattgatctaagatggagcaatttgacaattaccccatgctaaaacacgcc 40129171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 60372 - 60473
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||  |||||||||| || | ||||||||||| || ||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  60372 ataaattagaatataaaatacaaggtgtacatgtaatagcaaataaaacaaaattgatctaagatggagcaatttgacaattgccccatgctaaaactcg 60471  T
Q  114 cc 115  Q
    ||    
T  60472 cc 60473  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 6608404 - 6608505
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||| ||||||||||| ||||||||||  ||| || ||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||| ||    
T  6608404 ataaattggaatataaaatgtaggatgtacaactaatagcaaataaaacaaaattgatctaagatggggcaatttaacaattgtcccatgctaaaacccg 6608503  T
Q  114 cc 115  Q
    ||    
T  6608504 cc 6608505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 2471646 - 2471725
Alignment:
Q  116 ctcataaacagaacaggcnnnnnnngagaccacctgtgcctcaaaaaagataaggccaccgcttctgtccctttgctact 195  Q
    ||||||||||||||||||       |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  2471646 ctcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaagacaaggccaccgcttctgtctctttgctact 2471725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 6606711 - 6606653
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactc 112  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||    
T  6606711 aaataaaacaaaattgatctaagttggggcaatttcacaattgccccatgctaaaactc 6606653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 6607666 - 6607605
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  6607666 aaataaaataaaattgatctaagttggggcaatttcacaattgccccatgctaaaactcgcc 6607605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 29429500 - 29429558
Alignment:
Q  57 taaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgcc 115  Q
    |||||||||||||||||||||| ||| ||||| ||||||  | ||||||||||||||||    
T  29429500 taaaacaaaattgatctaagatggggaaatttgacaatttgctcatgctaaaactcgcc 29429558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 16338 - 16237
Alignment:
Q  14 ataaattgaaatataaaatgcaggatgtacatgtaacagtaaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcg 113  Q
    |||||||||||||||||||| ||||||||||  ||  || ||||||||||||||||||||||||| |   ||||| ||||||| || |||||||||| ||    
T  16338 ataaattgaaatataaaatgtaggatgtacagctagtagcaaataaaacaaaattgatctaagatggaccaatttaacaattgtcctatgctaaaacccg 16239  T
Q  114 cc 115  Q
    ||    
T  16238 cc 16237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 17041 - 17104
Alignment:
Q  54 aaataaaacaaaattgatctaagatagggtaatttcacaattgccccatgctaaaactcgccct 117  Q
    ||||||||||||||||||||||| |  || ||||||||||||| ||||||||||||||| ||||    
T  17041 aaataaaacaaaattgatctaagttgaggcaatttcacaattgtcccatgctaaaactcaccct 17104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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