View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_17 (Length: 524)

Name: NF6131_high_17
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_17
NF6131_high_17
[»] chr5 (8 HSPs)
chr5 (6-508)||(30049099-30049607)
chr5 (35-124)||(16795978-16796067)
chr5 (25-124)||(37679335-37679434)
chr5 (35-124)||(7102133-7102222)
chr5 (35-124)||(12020598-12020687)
chr5 (35-124)||(30697105-30697194)
chr5 (35-124)||(40370006-40370095)
chr5 (36-124)||(10276334-10276422)
[»] chr8 (7 HSPs)
chr8 (32-278)||(10682679-10682925)
chr8 (35-124)||(200443-200532)
chr8 (35-124)||(315280-315369)
chr8 (35-124)||(30408562-30408651)
chr8 (35-124)||(43810242-43810331)
chr8 (35-135)||(1288634-1288734)
chr8 (35-135)||(41947124-41947224)
[»] chr6 (6 HSPs)
chr6 (391-481)||(15566661-15566751)
chr6 (35-124)||(8318263-8318352)
chr6 (35-135)||(31927383-31927483)
chr6 (35-132)||(27570483-27570580)
chr6 (38-118)||(15500950-15501030)
chr6 (35-124)||(17161404-17161493)
[»] chr3 (6 HSPs)
chr3 (41-289)||(22929900-22930148)
chr3 (361-476)||(22929008-22929124)
chr3 (42-135)||(43551608-43551701)
chr3 (35-124)||(54170103-54170192)
chr3 (35-124)||(21848932-21849021)
chr3 (35-135)||(9699388-9699488)
[»] chr1 (4 HSPs)
chr1 (31-129)||(30642912-30643010)
chr1 (35-124)||(26313322-26313411)
chr1 (35-124)||(39795704-39795793)
chr1 (361-483)||(30645605-30645728)
[»] chr7 (2 HSPs)
chr7 (35-124)||(7942842-7942931)
chr7 (35-124)||(27758706-27758795)
[»] chr4 (5 HSPs)
chr4 (35-124)||(44148867-44148956)
chr4 (35-135)||(43681940-43682040)
chr4 (35-135)||(31356471-31356571)
chr4 (35-135)||(27187945-27188045)
chr4 (364-431)||(30860355-30860423)
[»] chr2 (3 HSPs)
chr2 (35-124)||(8052701-8052790)
chr2 (35-124)||(36672360-36672449)
chr2 (35-135)||(35953180-35953280)
[»] scaffold0044 (1 HSPs)
scaffold0044 (35-124)||(47624-47713)


Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 6 - 508
Target Start/End: Original strand, 30049099 - 30049607
Alignment:
Q  6 actgatatgaaaactactgatctgatactgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagtt 105  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30049099 actgatatgaaaactactgatctgatactataaaaaatgaagatagttagttatgggactacagatttggtcatttaaattttagaagtcttaatcagtt 30049198  T
Q  106 agttgacaaagaattgattttaggagtaccaaagttgaatataccagagaaagtatgtgatattttctt-gatagacaagcaacctaaaaatgcattcag 204  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||||| ||||||||||||    
T  30049199 agttgacgaagaattgattttaggagtaccaaagttgaatataccagagaaaatatgtgatattttttttgataaacaagcaacctagaaatgcattcag 30049298  T
Q  205 tgcaaatacaactcataggttaactgaggtgttgaatgtagtatattcggatgcatgtagtccattagaagttcctttaatgggagcaggaagatttggc 304  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049299 tgcaaatacaactcatagattaacagaggtgttgaatgtagtatattctgatgcatgtagtccattagaagttcctttaatgggagcaggaagatttggc 30049398  T
Q  305 tatttctgattaaagcaaagagtgtagtttttggtataatcaagaaggagaagtgc-----ttgttcctgcaatattgatgaagaacgagttcaacaaga 399  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||    
T  30049399 tatttctgattaaagcaaagagtgaagtttttggtataatcaagaaggagaagtgctctagttgttcctgcaatattgatgaagaacgagttcaacaaga 30049498  T
Q  400 agttgagattcagcaggagcctcccataacagttaatcaaaacatcagagtctcacaaaggaaaaggtttgtatcttctagattgatccactttaaccat 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  30049499 agttgagattcagcaggagcctcccataacagttaatcaaaacatcagagtctcacaaaggaaaaggtttgtatcttctagactgatccactttaacctt 30049598  T
Q  500 taaaacgtg 508  Q
    |||||||||    
T  30049599 taaaacgtg 30049607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 16795978 - 16796067
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  16795978 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 16796067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 37679335 - 37679434
Alignment:
Q  25 atctgatactgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    ||||||||  |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  37679335 atctgatatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 37679434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 7102222 - 7102133
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| | || |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  7102222 gtaaaagatgaagatagttggttatggcaatatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 7102133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 12020598 - 12020687
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  12020598 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 12020687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 30697105 - 30697194
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  30697105 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 30697194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 40370095 - 40370006
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| ||||||| || || ||||| |||||| |||||    
T  40370095 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaaccaattggttgataaagaaatgatt 40370006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 10276334 - 10276422
Alignment:
Q  36 taaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    ||||| ||||||||||  || ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||| | |||||| |||||    
T  10276334 taaaagatgaagatagccggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggtttataaagaaatgatt 10276422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 32 - 278
Target Start/End: Complemental strand, 10682925 - 10682679
Alignment:
Q  32 actgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggag 131  Q
    |||||||  ||||||| ||||||| | ||| |||| |||||||| ||||||| ||||||| |||| | ||| || ||||| ||| |||||||   |||||    
T  10682925 actgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggag 10682826  T
Q  132 taccaaagttgaatataccagagaaagtatgtgatattttcttgatagacaagcaacctaaaaatgcattcagtgcaaatacaactcataggttaactga 231  Q
     |||||| |||||| ||||||||||||| || ||| ||| |||||||| | |||||| || ||||||||| ||| |||| ||| ||||||| | ||||||    
T  10682825 caccaaaattgaatgtaccagagaaagtttgggatgtttgcttgataggccagcaacttagaaatgcattaagttcaaacacagctcatagatcaactga 10682726  T
Q  232 ggtgttgaatgtagtatattcggatgcatgtagtccattagaagttc 278  Q
    | |  |||||||| |||| || ||||  ||| | || ||||||||||    
T  10682725 gattctgaatgtaatatactcagatgtgtgtggccctttagaagttc 10682679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 200532 - 200443
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  200532 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 200443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 315369 - 315280
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  315369 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 315280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 30408651 - 30408562
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  30408651 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 30408562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 43810331 - 43810242
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  43810331 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 43810242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 1288634 - 1288734
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| |||||||||| ||| ||||  |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| |||||||||    
T  1288634 gtaaaagatgaagatagatggttatgacactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctaggagtac 1288733  T
Q  135 c 135  Q
    |    
T  1288734 c 1288734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 41947124 - 41947224
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| |||||||||| ||| ||||| | || |||||||||||| | | ||||||| |||||||||| |||||||| |||||  ||||| | |||||||    
T  41947124 gtaaaagatgaagatagctggttatggcattatagatttggtcatctcaattttagaggtcttaatcaattagttgataaagatatgattctgggagtac 41947223  T
Q  135 c 135  Q
    |    
T  41947224 c 41947224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 15566751 - 15566661
Alignment:
Q  391 tcaacaagaagttgagattcagcaggagcctcccataacagttaatcaaaacatcagagtctcacaaaggaaaaggtttgtatcttctaga 481  Q
    ||||||||||| ||||| || |||||||||||||||||||| | |||||||||||  ||||||||||||| |||| |||| ||||||||||    
T  15566751 tcaacaagaagatgagactcggcaggagcctcccataacagctgatcaaaacatctaagtctcacaaaggcaaagttttgcatcttctaga 15566661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 8318352 - 8318263
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  8318352 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 8318263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 31927483 - 31927383
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| |||||||||||||| ||||  | || || ||||||||| | | ||||||| |||||||||| ||||||||||||||  ||||| | |||||||    
T  31927483 gtaaaagatgaagatagttggttatgacattataggtttggtcatctcaattttagaggtcttaatcaattagttgacaaagatatgattatgggagtac 31927384  T
Q  135 c 135  Q
    |    
T  31927383 c 31927383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 27570580 - 27570483
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagt 132  Q
    |||||| |||||| | ||||| ||||| |||| |||||||||||| | | ||||||| |||||||| | || ||||| |||||| ||||||| |||||    
T  27570580 gtaaaagatgaaggttgttggttatggcactatagatttggtcatctcaattttagaggtcttaataaattggttgataaagaaatgattttgggagt 27570483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 15501030 - 15500950
Alignment:
Q  38 aaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaa 118  Q
    |||||||||||||||| | ||||| |||| || ||||||||| | | ||||||| || ||||||| |||||||| ||||||    
T  15501030 aaaaatgaagatagtttgttatggcactataggtttggtcatcttaattttagaggttttaatcaattagttgataaagaa 15500950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 17161404 - 17161493
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||| | ||||||  | || |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  17161404 gtaaaagatgaagatagcttgctatgacattatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 17161493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 289
Target Start/End: Complemental strand, 22930148 - 22929900
Alignment:
Q  41 aatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtaccaaagt 140  Q
    ||||||||||| ||||||||| |||| |  ||||| ||| | | ||  | |||||||||||| ||||||||||||||  ||||||| | |||||| ||||    
T  22930148 aatgaagatagctggctatggcactatatgtttggccatcttaattacataagtcttaatcatttagttgacaaagagatgattttggtagtacctaagt 22930049  T
Q  141 tgaatataccagagaaagtatgtgatattttcttgatagacaagcaacctaaaaatgcattcagtgcaaatacaactcataggttaactgaggtgttgaa 240  Q
    || |||||||  | ||| | | ||||| |   ||||||| ||||||||||| || ||||||||   | | |||||||||||| | ||  |||||| ||||    
T  22930048 tggatatacctcataaattttatgatactaggttgataggcaagcaacctagaactgcattcatctctactacaactcatagatcaaaagaggtgctgaa 22929949  T
Q  241 tgtagtatattcggatgcatgtagtccattagaagttcctttaatggga 289  Q
    |||||||||||  |||| |  | |||||||||| ||||||| |||||||    
T  22929948 tgtagtatattttgatgtaaatggtccattagaggttccttcaatggga 22929900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 476
Target Start/End: Complemental strand, 22929124 - 22929008
Alignment:
Q  361 ttgttcctgcaatattg-atgaagaacgagttcaacaagaagttgagattcagcaggagcctcccataacagttaatcaaaacatcagagtctcacaaag 459  Q
    |||||| |||||||||  ||||||||| |||| ||||||| ||||| | |||  || ||||||||||| ||| |||| ||||||||| ||||||||||||    
T  22929124 ttgttcgtgcaatattttatgaagaacaagttaaacaagaggttgatactcaatagaagcctcccatagcagctaattaaaacatcaaagtctcacaaag 22929025  T
Q  460 gaaaaggtttgtatctt 476  Q
    | |||||||||| ||||    
T  22929024 gcaaaggtttgtgtctt 22929008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 43551608 - 43551701
Alignment:
Q  42 atgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtacc 135  Q
    |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| ||||||||||    
T  43551608 atgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctaggagtacc 43551701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 54170192 - 54170103
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  54170192 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 54170103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 21848932 - 21849021
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  21848932 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 21849021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 9699388 - 9699488
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| |||||||||  | | ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| | |||||||    
T  9699388 gtaaaagatgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtac 9699487  T
Q  135 c 135  Q
    |    
T  9699488 c 9699488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 30642912 - 30643010
Alignment:
Q  31 tactgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttagg 129  Q
    |||||| || || |||||||| |||||||||  ||| || ||||||||  ||| ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  30642912 tactgtgaataaagaagatagctggctatggacctataggtttggtcacctaaattttagaagccttaatcatttagttgacaaagaaatgattttagg 30643010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 26313322 - 26313411
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  26313322 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 26313411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 39795704 - 39795793
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  39795704 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 39795793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 483
Target Start/End: Original strand, 30645605 - 30645728
Alignment:
Q  361 ttgttcctgcaatatt-gatgaagaacgagttcaacaagaagttgagattcagcaggagcctcccataacagttaatcaaaacatcagagtctcacaaag 459  Q
    |||||| ||||||||| | |||||||| |||  ||||||||||||| |  ||   ||||||||||||||||   ||||||| ||||||||||| | ||||    
T  30645605 ttgttcttgcaatatttgctgaagaacaagtctaacaagaagttgatacccaaggggagcctcccataacaacaaatcaaatcatcagagtctgataaag 30645704  T
Q  460 gaaaaggtttgtatcttctagatt 483  Q
      |||||||||||||||| |||||    
T  30645705 acaaaggtttgtatcttcaagatt 30645728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 7942931 - 7942842
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  7942931 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 7942842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 27758706 - 27758795
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  27758706 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 27758795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 44148867 - 44148956
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  44148867 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 44148956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 43682040 - 43681940
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| |||||||||| ||| ||||| |||| ||||||||||||   | ||||||| |||||||||| || ||||| |||||| ||||||| |||||||    
T  43682040 gtaaaagatgaagatagctggttatggcactatagatttggtcatcccaattttagaggtcttaatcaattggttgataaagaaatgattttgggagtac 43681941  T
Q  135 c 135  Q
    |    
T  43681940 c 43681940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 31356471 - 31356571
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| || ||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || | ||| |||||| ||||||| |||||||    
T  31356471 gtaaaagataaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggatgataaagaaatgattttgggagtac 31356570  T
Q  135 c 135  Q
    |    
T  31356571 c 31356571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 27187945 - 27188045
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| |||||||||  | | ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| | |||||||    
T  27187945 gtaaaagatgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtac 27188044  T
Q  135 c 135  Q
    |    
T  27188045 c 27188045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 431
Target Start/End: Complemental strand, 30860423 - 30860355
Alignment:
Q  364 ttcctgcaatatt-gatgaagaacgagttcaacaagaagttgagattcagcaggagcctcccataacag 431  Q
    ||||||||||||| |||||||||| ||| |||||| ||||||| | |||  |||||||||| |||||||    
T  30860423 ttcctgcaatatttgatgaagaacaagtccaacaataagttgatactcaagaggagcctcctataacag 30860355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 8052701 - 8052790
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  8052701 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 8052790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 36672360 - 36672449
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  36672360 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 36672449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 35953280 - 35953180
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 134  Q
    |||||| ||||||||| || | ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| | |||||||    
T  35953280 gtaaaagatgaagatattttgttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtac 35953181  T
Q  135 c 135  Q
    |    
T  35953180 c 35953180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 47713 - 47624
Alignment:
Q  35 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 124  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  47713 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 47624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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