View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_18 (Length: 518)
Name: NF6131_high_18
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 49653487 - 49653957
Alignment:
| Q |
19 |
cacaccctattgtcaaaatctttctttgttttttattttgtaagctaaagttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaa |
118 |
Q |
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| T |
49653487 |
cacaccctattgtcaaaatctttctttgttttttattttgtaagctaaacttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaa |
49653586 |
T |
|
| Q |
119 |
ggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcat |
218 |
Q |
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| T |
49653587 |
ggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcat |
49653686 |
T |
|
| Q |
219 |
ttcatgcatggaaagattacaagtcttaaa---tcttactttgctaaacccaaaatcactgtcatttccatttacccttttcttaccactaaaacactgt |
315 |
Q |
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| T |
49653687 |
ttcatgcatggaaagattacaagtcttaaatcttcttactttgctaaacccaaaatcactgtcatttccatttacccttttcttaccactaaaacactgt |
49653786 |
T |
|
| Q |
316 |
atggtttggtggctggtgctctaataagtacaatgtaaccctcgacacc------tgaagacgtgtatggtgtccaacacatgttaatgtctcacatgtg |
409 |
Q |
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| T |
49653787 |
atggtttggtggctggtgctctaataagtacaatgtagcactcgacaccttagattgaagacgtgtatggtgtccaacacgtgttagtgtctcacat--- |
49653883 |
T |
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| Q |
410 |
ttggtgtccgtgttaaacaccaacacaacacatacatgtgattaaattgaaatactacttctattttttaaatgcggtcagtgacagtgtctgtg |
504 |
Q |
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| T |
49653884 |
-------------------ccgacacaacacatacatgtgattaaattgaaatactact--tattttttaaatgcggtcagtgacagtgtttgtg |
49653957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 14382151 - 14382068
Alignment:
| Q |
83 |
cagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtact |
166 |
Q |
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| T |
14382151 |
cagacatggttcttgaaagtttctatccactgtgaaggttgcagaaagaaagtaaagaaagttttaaagcgcattgatggtact |
14382068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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