View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_20 (Length: 511)
Name: NF6131_high_20
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 11545649 - 11546131
Alignment:
| Q |
13 |
aatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgtggaagatattactgata |
112 |
Q |
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| T |
11545649 |
aatattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgtggaagatattactgata |
11545748 |
T |
|
| Q |
113 |
taaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgt--agttgttcattttgttgcttaagc |
210 |
Q |
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| T |
11545749 |
tcaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtgtagttgttcattttgttgcttaagc |
11545848 |
T |
|
| Q |
211 |
aaacaaaataaatcaacgcttttctttgtattatgttataattaagtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctat |
310 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11545849 |
aaacaaaataaatcaatgcttttctttgtattatgttataa----gtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctat |
11545944 |
T |
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| Q |
311 |
gaatgatgaatttatctattctatgttattgttatcagttaaagctgttaatttattgctcaaaaagttagagctgttaatttggttcaagagaatttcc |
410 |
Q |
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| T |
11545945 |
gaatgatgaatttatctattctatgttattgttatcagttaaagctgttaatttattgctcaaaaagttagagctgttaatttggttcaagagaatttcc |
11546044 |
T |
|
| Q |
411 |
ttgattgtgggagcatttgagggttccatttccagataaaggctacattcgatgtaatcgtggaaatggaagatttcaaatgaatac |
497 |
Q |
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| T |
11546045 |
ttgattgtgggagcatttgagagttccatttccagataaaggctacattcgatgtaatcgtggaaatggaagatttcaaatgaatac |
11546131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 11559141 - 11559292
Alignment:
| Q |
75 |
aattgaccaagtgcttaatgtggaagatattactgatataaacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaa |
174 |
Q |
| |
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||||| |||||||||||||||||| | ||| |||||| |||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11559141 |
aattggccaagtgcttaatgtggattctcttaatgatatcaacagtcaattggcatctactattctaaatgtgaaggatgctcttatgagttctatttaa |
11559240 |
T |
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| Q |
175 |
caatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
226 |
Q |
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| T |
11559241 |
caatttggacgtagttgttcattttgttgcttaagcaaacaaaataaatcaa |
11559292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 253 - 402
Target Start/End: Original strand, 11559350 - 11559493
Alignment:
| Q |
253 |
taagtttgcttgacattttaaatcgtataataatacatgactttggtcttttttctatgaatgatgaatttatcta-ttctatgttattgttatcagtta |
351 |
Q |
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| T |
11559350 |
taagtttgcttgacattttaaatcttataataatacatgactttggtcttttctctatgaatgatgaattgatctatttcta------tgttttcagtta |
11559443 |
T |
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| Q |
352 |
aagctgttaatttattgctcaaaaagttagagctgttaatttggttcaaga |
402 |
Q |
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|||| || |||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
11559444 |
gagctattgatttattg-tcaaaaagttagagcagttaatttggttcaaga |
11559493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 20915673 - 20915470
Alignment:
| Q |
21 |
agatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgtggaagatattactgatataaacaca |
120 |
Q |
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||||||||| |||||||| |||||| |||||||| |||| |||| |||| ||| ||||||||||||| ||||| |||| || |||||||||| ||||| |
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| T |
20915673 |
agatggctcattgttaactttggcatcccaaattatgagtactaatccatatgcaattgaccaagtggttaatttggattatgttactgatatcaacacc |
20915574 |
T |
|
| Q |
121 |
catttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttggacgtagttgttcattttgttgcttaagcaaacaaaata |
220 |
Q |
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|| ||||||||||||||||| | ||| |||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20915573 |
caattggcaactactattctgcaagtg-aggatgcttttttgagctatatttaacaatttgga-atagttgttcattttgttgcttaagcaaacaaaata |
20915476 |
T |
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| Q |
221 |
aatcaa |
226 |
Q |
| |
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|||||| |
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| T |
20915475 |
aatcaa |
20915470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 20916421 - 20916589
Alignment:
| Q |
15 |
tattgaagatggctcgttgttaaccttggcagcccaaattctgagcactagtccacatgaaattgaccaagtgcttaatgtggaagatattactgatata |
114 |
Q |
| |
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||||| ||||||||| |||||||| |||||| |||||||| ||| ||||||||| ||| ||||||| ||||||||||| | || || |||||||||| |
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| T |
20916421 |
tattggagatggctcattgttaactttggcatcccaaatttcgagtactagtccatatgcaattgactaagtgcttaattttgattatgttactgatatg |
20916520 |
T |
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| Q |
115 |
aacacacatttggcaactactattctaaatgtgaaggatgctcttatgagctctatttaacaatttgga |
183 |
Q |
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||||| || ||||||||||||||||| | |||||||||||||| ||||||| ||||||||| |||||| |
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| T |
20916521 |
aacacccaattggcaactactattctgcaagtgaaggatgctctcatgagctatatttaacagtttgga |
20916589 |
T |
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