View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_24 (Length: 474)
Name: NF6131_high_24
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 47875815 - 47876257
Alignment:
| Q |
12 |
tatacttaattttggccgtagaagactatcatggatttggggcagaagactatcagtttgaaatgaatactgcatattactgcattgcaaggacttctgt |
111 |
Q |
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| T |
47875815 |
tatacttaattttggccgtagaagactatcatggatttggggcagaagactatcagtttgaaatgaatactgcatattactgcattgcaaggacttctgt |
47875914 |
T |
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| Q |
112 |
aaggagtagctgtaagtcagaatgatggaaagatataattcaacctccaagtgggagagacagaatgatcagttaagtcgtgccccgtaannnnnnnnga |
211 |
Q |
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| T |
47875915 |
aaggagtagttgtaagtcagaatgatggaaagatataattcaacctccaagtgggagagacagaatgatcagttaagtcgtgccccgtaaatttttttca |
47876014 |
T |
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| Q |
212 |
agcagcactgtgcggtcttcaacgagcggagaggggggtaacttgagaaaactagaaagtgaccgttcatatcgccatgcttaccgccaaaaggaagtgg |
311 |
Q |
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| T |
47876015 |
agcagcactgtgcggtcttcaacgagcggagaggggggtaacttgagaaaactagaaagtgaccgttcatatcgctatgcttaccgccaaaaggaagtgg |
47876114 |
T |
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| Q |
312 |
ctaacagattgggggagatgttatacgagggattaattacgcatagcactggttccttctcgagcccagttattcttataaaaaagaatgatggacctta |
411 |
Q |
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| T |
47876115 |
ctaacagattgggggagatgttatacgagggattaattacgcatagcactggtcccttctcgagcccagttattcttataaaaaagaatgatggac---- |
47876210 |
T |
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| Q |
412 |
gcttgaggattataggacactaaataaggcgatggtgcatatcctctt |
459 |
Q |
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| T |
47876211 |
-cttgaggattataggacactaaataaggcgatggtgcatatcctctt |
47876257 |
T |
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