View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_27 (Length: 469)
Name: NF6131_high_27
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 34642336 - 34642800
Alignment:
| Q |
1 |
tgtgagtctcgtaacatttaagggaaatatgattacacagctagctattctacttagataagtttgtcaagaattagtttatgaatgatataagtattag |
100 |
Q |
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| T |
34642336 |
tgtgagtctcgtaacatttaagggaaatatgattacacagctagctattatacttagataagtttgtcaagaattagtttatgaatgatataagtattag |
34642435 |
T |
|
| Q |
101 |
aaccaatgttttaaaaaatagagcggatattatacggcgaaccaaacaaatctgttaaatcgtaatccaaatcgttcaatc-tagtttgatgtgattcat |
199 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| | ||||| | || |||||||||||||| |
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| T |
34642436 |
aagcaatgttttaaaaaatagagcggatactatacggcgaaccaaacaaacctgttaaaccgtaattcaaaccattcaaccctaatttgatgtgattcac |
34642535 |
T |
|
| Q |
200 |
cctgacaagttctcaattcaacgggtcgaaccaactatggtatcaaattttccaatgacggtttattacttgacccattttcacattgcattctactccc |
299 |
Q |
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|||||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34642536 |
cctgacaagttcacgattcaacggatcaaaccaactatgatatcaaattttccaatgacggtttattacttgacccattttcacattacattctactccc |
34642635 |
T |
|
| Q |
300 |
atcaacaaatctcacctaaaagctaaaatgagaataaagcttggtcttaaacatatatatagatagacacttgttcaagaaatcagaaatggaaggaaga |
399 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34642636 |
atcaacacatctcacctaaaagctaaaatgagaataaagctttgtcttaaacatatatatagatagacacttgttcaagaaatcaaaaatggaaggaaga |
34642735 |
T |
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| Q |
400 |
ccaatgttgcaattcttgagcctaaaaacaattaaaacgtttaatgatatgtggcctatgctact |
464 |
Q |
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| T |
34642736 |
ccaatgttgcaattcttgagcctaaaaacaattaaaacgtttaatgatatgtggcctatgctact |
34642800 |
T |
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