View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_3 (Length: 1015)

Name: NF6131_high_3
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_3
NF6131_high_3
[»] chr4 (1 HSPs)
chr4 (19-1004)||(6118333-6119318)


Alignment Details
Target: chr4 (Bit Score: 914; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 914; E-Value: 0
Query Start/End: Original strand, 19 - 1004
Target Start/End: Original strand, 6118333 - 6119318
Alignment:
Q  19 ggatcctccacctcccatcaccatcgaccaccgcagaggcaaccccaagtttgaccaaccgttgaccttgagaaaaactatgtgtagcaaaaggagcact 118  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  6118333 ggatcctccacctctgatcaccatcgaccatcgcagaggcaaccccaagtttgatcaatcgttgaccttgagaaaaactatgtgtagcaaaaggagcact 6118432  T
Q  119 acctaaattcacttcaataattcccacaacaggcaaaggcacgctaacaacaacatcaaaccctacaccatacaacactgtttcaggcacttccaatatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  6118433 acctaaattcacttcaataattcccacaacaggcaaaggcacgctcacaacaacatcaaatcctacaccatacaacactgtctcaggcacttccaatatc 6118532  T
Q  219 tcgggtcgaatattcgccttatccgaatccaaatactccggtgaaaatgcttcaatttttaactctgtcgcaaactcaacatcctcaaaacgataaaaca 318  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6118533 ttgggtcgaatattcgccttatccgaatccaaatactccggtgaaaatgcttcaatttttaactctgtcgcaaactcaacatccacaaaacgataaaaca 6118632  T
Q  319 catgcgggttactacctgctagtaaaacccgtccatccggtaacaaattcgccgttgaatgataaagtctcggcacagtacccggattcaaaaccataaa 418  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6118633 catgcgggttactacccgctagtaaaacccgtccatccggtaacaaattcgccgttgaatgataaagtctcggcacagtacccggattcaaaaccataaa 6118732  T
Q  419 ccgtaacccaaccggttcaccaggtcgatataaaaccggattcaaacacggatccgaacccatttcaaaaccttgtgtacctttcatagctccatttata 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6118733 ccgtaacccaaccggttcaccaggtcgatataaaaccggattcaaacacggatccgaacccatttcaaaaccttgtgtacctttcatagctccatttata 6118832  T
Q  519 atcaaaacatcaccggttggtaaaattaccatatcacccataattctcgcaaacggcatatcctccatttcccaaaccgggtcggatcccgttgccatta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6118833 atcaaaacatcaccggttggtaaaattaccatatcacccataattctcgcaaacggcatatcctccatttcccaaaccgggtcggatcccgttgccatta 6118932  T
Q  619 tccgcccacaactcccatgcgccggaatatccgtattccgttcaagaaacgcaccgtattgagcaccgccacaaacaacacccaccgcctctgaaaattc 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6118933 tccgcccacaactcccatgcgccggaatatccgtattccgttcaagaaacgcaccgtattgagcaccgccacaaacaacaaccaccgcctctgaaaattc 6119032  T
Q  719 accttctaaagcaagcatcaccgaactccccgccgacggataatttctcggtccacccgttaactccgggtaaacccgaaccacacgattttcgttaaaa 818  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119033 accttctaaagccagcatcaccgaactccccgccgacggataatttctcggtccacccgttaactccgggtaaacccgaaccacacgattttcgttaaaa 6119132  T
Q  819 tcatacataatcgatttcgtgttcgcgaacacgaaaaggttaccgttaggaaggagatgaacatacgggtataaattatccatttgtgtatcttcagttt 918  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119133 tcatacataaccgatttcgtgttcgcgaacacgaaaagtttaccgttaggaaggagatgaacatacgggtataaattatccatttgtgtatcttcagttt 6119232  T
Q  919 cttgcagaaacggaaacaaaacgacaccattttcacgtttcgggtaaaattcaactgtgtttgaacctcttccaccgatgatgatg 1004  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6119233 cttgtagaaacggaaacaaaacgacaccgttttcgcgtttcgggtaaaattcaactgtgtttgaacctcttccaccgatgatgatg 6119318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University