View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_30 (Length: 461)
Name: NF6131_high_30
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 129 - 431
Target Start/End: Original strand, 30718099 - 30718401
Alignment:
| Q |
129 |
cctgattgagttgattcatggtgagatcaacggtgtggtgagagtgaagaagatgaatataatcttcgaggcagatcttctcgttctttgctggtcgctt |
228 |
Q |
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| T |
30718099 |
cctgattgagttgattcatggtgagatcaacggtgtggcgagagtgaagaagatgaatgtaatcttcgaggcagatcttctcgttctttgctggtcgctt |
30718198 |
T |
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| Q |
229 |
cttcgtggagattgcgtgtggtaccattgccattcccgttgagaattcttctgccattgaaatttcaaatttcaattcaaactgaaaatgaaagaggaaa |
328 |
Q |
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| T |
30718199 |
cttcgtggagattgcgtgtggtaccattgccattcccgttgagaattcttctgccattgaaatttcaaatttcaattcaaactgaaaatgaaagagggaa |
30718298 |
T |
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| Q |
329 |
atggggacttttatacctctcctcgcgcgctttttcacgagtttgttcctagtctattatcacttcttctagatatttcttgtttgtttgcgaaattaaa |
428 |
Q |
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| T |
30718299 |
atgggaacttttatacccctcctcgcgcgctttttcacgagtttgttactagtctattagcacttcttctagatctttcttgtttgtttgcaaaattaaa |
30718398 |
T |
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| Q |
429 |
taa |
431 |
Q |
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||| |
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| T |
30718399 |
taa |
30718401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 129 - 409
Target Start/End: Complemental strand, 30894210 - 30893929
Alignment:
| Q |
129 |
cctgattgagttgattcatggtgagatcaacggtgtggtgagagtgaagaagatgaatataatcttcgaggcagatcttctcgttctttgctggtcgctt |
228 |
Q |
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||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| ||||| |
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| T |
30894210 |
cctgattgagttgattcatagtgagatcattggtgttgcgagagtgaagaagatgaatgtaatcttcgaggcagagcttttcgttctttgctgaacgctt |
30894111 |
T |
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| Q |
229 |
cttcgtggagattgcgtgtggtaccattgccattcccgttgagaattcttctgccattgaaatttcaaatttcaatt-caaactgaaaatg-aaagagga |
326 |
Q |
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| T |
30894110 |
cttcgaggagattgcgtgtggtaccattgccattcccgttgagaattcttcagccattgaaatttcaa-tttcaatttcaaactgaaaatgtaaggaggg |
30894012 |
T |
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| Q |
327 |
aaatggggacttttatacctctcctcgcgcgctttttcacgagtttgttcctagtctattatcacttcttctagatatttctt |
409 |
Q |
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| T |
30894011 |
aagggtcaagttttatacccgtactcgcgcgctttttcacgagtttgttactcgtctgttaccatttcttctagatctttctt |
30893929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 30717989 - 30718021
Alignment:
| Q |
18 |
ttcttgaagccgtgaatacgaatgacctgagaa |
50 |
Q |
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| T |
30717989 |
ttcttgaagccgtgaatacgaatgacctgagaa |
30718021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 30894318 - 30894286
Alignment:
| Q |
18 |
ttcttgaagccgtgaatacgaatgacctgagaa |
50 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
30894318 |
ttcttgaagccgtgaatacgaatgacctgagaa |
30894286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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