View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_31 (Length: 456)
Name: NF6131_high_31
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 429
Target Start/End: Original strand, 6241198 - 6241606
Alignment:
| Q |
21 |
ggtcagctcatcacgctttgcctcaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactcca |
120 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241198 |
ggtcagctcatcacgctttgcctgaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactcca |
6241297 |
T |
|
| Q |
121 |
acctgaattttgtagggcaatagctggaagattttatcgatctgcaacacaaaacaaaatttcataaagttatgcaagatagaacatgaactagacacca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241298 |
acctgaattttgtagggcaatagctggaagattttatcgatctgcaacacaaaacaaaatttcataaagttatgcaagatagaacatgaactagacacca |
6241397 |
T |
|
| Q |
221 |
ttgcattaaattcagaaagtaaagctctccnnnnnnnnaacattttattagcaaaaaaggaaatccatgcttcaaagttcaaactgataagatgtattta |
320 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6241398 |
ttgcattaaattcagaaagtaaagctctcctttttttaaaaattttattagcaaaaaaggaaatccatgcttcaaagttcaaactgataagatgtgttta |
6241497 |
T |
|
| Q |
321 |
taaacaatataatttgtaaagtaaaaacaagtggaaatcaagtatatcgaacaaactttttcctcgaaatcacatgaaagcatttcatcaacctcatcca |
420 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241498 |
taaacaatataatttgtaaagtaaaaacaaatggaaatcaagtatatcgaacaaaccttttcctcgaaatcacatgaaagcatttcatcaacctcatcca |
6241597 |
T |
|
| Q |
421 |
taacgacca |
429 |
Q |
| |
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||||||||| |
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| T |
6241598 |
taacgacca |
6241606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 6249596 - 6249748
Alignment:
| Q |
18 |
aagggtcagctcatcacgctttgcctcaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattact |
117 |
Q |
| |
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|||||||||||| ||||||||| | ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |
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| T |
6249596 |
aagggtcagctcgtcacgctttacgaggattctcactggcttattcatgaacttcctagtaatctcaagggcttcaggtggcattgtagcagaaaatact |
6249695 |
T |
|
| Q |
118 |
ccaacctgaattttgtagggcaatagctggaagattttatcgatctgcaacac |
170 |
Q |
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||||||||||||||| |||| | |||||||||| | || |||||||||||| |
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| T |
6249696 |
ccaacctgaattttgcctggcagttgctggaagatgtcatagatctgcaacac |
6249748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 17545262 - 17545089
Alignment:
| Q |
18 |
aagggtcagctcatcacgctttgcctcaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattact |
117 |
Q |
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|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17545262 |
aagggtcagctcatcaggctttgcctgaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagcagagattact |
17545163 |
T |
|
| Q |
118 |
ccaacctgaattttgtagggcaatagctggaagattttatcgatctgcaacacaaaacaaaa-tttcataaagt |
190 |
Q |
| |
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||||||||||||||| | || | ||||| |||||||| ||||||||||||||| || ||||| ||||||||||| |
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| T |
17545162 |
ccaacctgaattttgcatggtagtagcttgaagatttcatcgatctgcaacaccaatcaaaattttcataaagt |
17545089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 440
Target Start/End: Complemental strand, 17545049 - 17544885
Alignment:
| Q |
272 |
caaaaaaggaaatccatgcttc-aaagttcaaactgataagatgtatttataaacaatataatttgtaaagtaaaaacaagtggaaatcaagtatatcga |
370 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||| |||||||| | |||||||||| |||| ||||| |||||| | ||||||||||| || || |
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| T |
17545049 |
caaaaaaggaaattcatgctttgaaagttcaaactgttaagatgtgtatataaacaatggaattagtaaa-taaaaaaa--tggaaatcaagcatgtc-- |
17544955 |
T |
|
| Q |
371 |
acaaactttttcctcgaaatcacatgaaagcatttcatcaacctcatccataacgaccatctttatgcaa |
440 |
Q |
| |
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|||||| || |||| |||| || ||||||||||| |||||||||||||||||| | ||||||||||||| |
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| T |
17544954 |
acaaaccttatccttgaaaccaagtgaaagcatttgatcaacctcatccataacaaacatctttatgcaa |
17544885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 42718718 - 42718604
Alignment:
| Q |
18 |
aagggtcagctcatcacgctttgcctcaattgtcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattact |
117 |
Q |
| |
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|||||||| |||||||||||| || |||| |||| ||||| |||||||||||||| || ||||| || || || || |||||||||| ||||| ||| |
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| T |
42718718 |
aagggtcaattcatcacgctttaccagaattctcactggcttattcatgaacttccttgtgatctccagagcctctggaggcattgtagcagagaacact |
42718619 |
T |
|
| Q |
118 |
ccaacctgaattttg |
132 |
Q |
| |
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||||||||||||||| |
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| T |
42718618 |
ccaacctgaattttg |
42718604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 17533738 - 17533837
Alignment:
| Q |
50 |
tcacaggctttttcatgaacttcctagtaatctcaagggcttcaggtggcattgtagaagagattactccaacctgaattttgtagggcaatagctggaa |
149 |
Q |
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||||||| || |||||||||||||| || |||||||| || ||||| |||||||||| ||||| ||||| || ||||| || | ||||| |||||||| |
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| T |
17533738 |
tcacaggtttgttcatgaacttccttgtgatctcaagtgcctcaggaggcattgtagcagagaaaactccgacttgaatcttagatggcaacagctggaa |
17533837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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