View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_57 (Length: 354)
Name: NF6131_high_57
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 50274982 - 50275286
Alignment:
| Q |
19 |
ctatggcaattagtttcaagcgtagcactgtcacaacataacatccccttgaatgtgatgatattcacaacatttatcaatacgtcaattattcgcctac |
118 |
Q |
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| T |
50274982 |
ctatggcaattagtttcaagcgtagcactgtcacaacataacatccccttgaatgt-------------------atcaatacgtcaattattcgcctac |
50275062 |
T |
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| Q |
119 |
acactagttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataataaattcagagctcggattcgtgaaatgaaatcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |
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| T |
50275063 |
acactagttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataatgaattaagagctctgattcgtgaaatgaaatcat |
50275162 |
T |
|
| Q |
219 |
ttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50275163 |
ttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaata |
50275262 |
T |
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| Q |
319 |
atgctcaaaatgttatcactctca |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
50275263 |
atgctcaaaatgttatcactctca |
50275286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 50279006 - 50279310
Alignment:
| Q |
19 |
ctatggcaattagtttcaagcgtagcactgtcacaacataacatccccttgaatgtgatgatattcacaacatttatcaatacgtcaattattcgcctac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50279006 |
ctatggcaattagtttcaagcgtagcactgtcacaacataacatccccttgaatgt-------------------atcaatacgtcaattattcgcctac |
50279086 |
T |
|
| Q |
119 |
acactagttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataataaattcagagctcggattcgtgaaatgaaatcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |
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| T |
50279087 |
acactagttatgcactatagaatgtgtcaattcctttagtattctttaggaaatgctgaccataatgaattaagagctctgattcgtgaaatgaaatcat |
50279186 |
T |
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| Q |
219 |
ttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatccgcctaagaaaaacaata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50279187 |
ttatgacaaggagagcacgagcagcttggtgcgcagtcaaaattcgacgcatctgttgcagtgtttgttgcctcaagatatctgcctaagaaaaacaata |
50279286 |
T |
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| Q |
319 |
atgctcaaaatgttatcactctca |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
50279287 |
atgctcaaaatgttatcactctca |
50279310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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