View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_58 (Length: 351)

Name: NF6131_high_58
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_58
NF6131_high_58
[»] chr1 (2 HSPs)
chr1 (11-325)||(42100278-42100592)
chr1 (97-141)||(7537047-7537091)
[»] chr4 (3 HSPs)
chr4 (97-154)||(52198331-52198388)
chr4 (111-150)||(36498654-36498693)
chr4 (97-154)||(33913930-33913989)
[»] chr8 (3 HSPs)
chr8 (106-154)||(41951176-41951224)
chr8 (83-150)||(6474020-6474087)
chr8 (97-154)||(35910561-35910620)
[»] chr5 (1 HSPs)
chr5 (111-154)||(3622253-3622296)
[»] chr2 (2 HSPs)
chr2 (106-154)||(14818700-14818748)
chr2 (115-155)||(1208617-1208657)
[»] chr7 (1 HSPs)
chr7 (83-154)||(38701558-38701629)
[»] chr6 (2 HSPs)
chr6 (91-154)||(6793471-6793534)
chr6 (109-154)||(28067307-28067352)
[»] chr3 (1 HSPs)
chr3 (111-175)||(782248-782311)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 42100278 - 42100592
Alignment:
Q  11 cataggttgttgcggttgtgatacggggttacacttcggtgacattgagacttaattagcaacacatttggaggtaacacttcgacgactttgagtttga 110  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  42100278 cataggttgttgcggctgtgatacggggttacacttcggtgacattgagacttaattagcaatatatttggaggtaacacttcgacgactttgaatttga 42100377  T
Q  111 tgactttgtctctatctcgcttctaaccaataattctctctcatttaaaatacattaaagtcaccgaagacnnnnnnntacaaaatcactcgaaatattt 210  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  42100378 tgactttgtttctatcttgcttctaaccaatatttctctctcatttaaaatacattaaagtcaccgaagacacaaaaatacaaaatcactcgaaatattt 42100477  T
Q  211 ccctacatttggagtgttttaactgattttccaatattttttaattgaaaaatgttacattgccgtaaaactttgatttgtcgataagacttcaatattt 310  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42100478 ccctacatttggagtgttttaaccgattttccaatattttttatttgaaaaatgttacattgccgtaaaactttgatttttcgataagacttcaatattt 42100577  T
Q  311 acaatcactccatca 325  Q
    ||||| |||||||||    
T  42100578 acaattactccatca 42100592  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 7537091 - 7537047
Alignment:
Q  97 gactttgagtttgatgactttgtctctatctcgcttctaaccaat 141  Q
    ||||||||||||| |||||||||||||||||| || |||||||||    
T  7537091 gactttgagtttggtgactttgtctctatctctctcctaaccaat 7537047  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 52198331 - 52198388
Alignment:
Q  97 gactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 154  Q
    |||||| ||||||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  52198331 gactttaagtttgacgactttatctctatctcgattctaaccaataattatctctcat 52198388  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 36498693 - 36498654
Alignment:
Q  111 tgactttgtctctatctcgcttctaaccaataattctctc 150  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  36498693 tgactttgtctctatctctcttctaaccaataattctctc 36498654  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 33913930 - 33913989
Alignment:
Q  97 gactttgagtttgatgactttgtctcta--tctcgcttctaaccaataattctctctcat 154  Q
    ||||||| ||||||||||||||||| ||  |||| || ||||||||||||||||||||||    
T  33913930 gactttgtgtttgatgactttgtctttatctctctctcctaaccaataattctctctcat 33913989  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 41951176 - 41951224
Alignment:
Q  106 tttgatgactttgtctctatctcgcttctaaccaataattctctctcat 154  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||||    
T  41951176 tttgatgactttgtctctatctctctcctaatcaataattctctctcat 41951224  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 6474087 - 6474020
Alignment:
Q  83 ggtaacacttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctc 150  Q
    ||||||||||||  ||||||||||||| ||| ||||||| |||||| |||||||| ||||||| ||||    
T  6474087 ggtaacacttcggtgactttgagtttggtgattttgtctatatctctcttctaactaataattatctc 6474020  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 35910561 - 35910620
Alignment:
Q  97 gactttgagtttgatgactttgtctcta--tctcgcttctaaccaataattctctctcat 154  Q
    ||||||| ||||||||||||||||| ||  |||| || |||||||||||||| |||||||    
T  35910561 gactttgtgtttgatgactttgtctttatctctctctcctaaccaataattccctctcat 35910620  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 3622296 - 3622253
Alignment:
Q  111 tgactttgtctctatctcgcttctaaccaataattctctctcat 154  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  3622296 tgactttgtctctatctctcttctaaccaataattttctctcat 3622253  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 14818700 - 14818748
Alignment:
Q  106 tttgatgactttgtctctatctcgcttctaaccaataattctctctcat 154  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||||||    
T  14818700 tttggtgactttgtctctatctctctcataaccaataattctctctcat 14818748  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 1208617 - 1208657
Alignment:
Q  115 tttgtctctatctcgcttctaaccaataattctctctcatt 155  Q
    |||||||||||||| ||  ||||||||||||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcatt 1208657  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 38701629 - 38701558
Alignment:
Q  83 ggtaacacttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 154  Q
    |||||||||| || ||  |||| |||| ||||||||| ||||| || |||||||||||||||||||| ||||    
T  38701629 ggtaacacttagatgatcttgaatttggtgactttgtttctatatctcttctaaccaataattctctttcat 38701558  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 6793471 - 6793534
Alignment:
Q  91 ttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 154  Q
    ||||| ||||||| ||||| ||| ||||||||||||||  | ||||||||||||| ||||||||    
T  6793471 ttcgatgactttgtgtttggtgattttgtctctatctctatcctaaccaataattatctctcat 6793534  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 28067307 - 28067352
Alignment:
Q  109 gatgactttgtctctatctcgcttctaaccaataattctctctcat 154  Q
    ||||| ||||||| |||||| |||||||||||| ||||||||||||    
T  28067307 gatgattttgtctttatctctcttctaaccaatcattctctctcat 28067352  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 782248 - 782311
Alignment:
Q  111 tgactttgtctctatctcgcttctaaccaataattctctctcatttaaaatacattaaagtcacc 175  Q
    |||||||||||||||||| || ||||| ||  ||||||||||| | |||||||| ||||||||||    
T  782248 tgactttgtctctatctctctcctaacaaaacattctctctca-tcaaaatacactaaagtcacc 782311  T

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