View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_6 (Length: 833)
Name: NF6131_high_6
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 42574885 - 42574458
Alignment:
| Q |
18 |
caggagcaattttcccaagaggagtacttatgagaggatgaacaacccaagaaaatgcacttctagttcttggaaacacaagacaatcctaagctgcaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
42574885 |
caggagcaattttcccaagaggagtacttatgggaggatgaacaacccaagaaaatgcacttctagttcttggaaacacaagacagtcttaagctgcaaa |
42574786 |
T |
|
| Q |
118 |
aaggaatagcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagttaagctgcaaaacagtgggtt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42574785 |
aagggatagcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaatggtttaaagtaggatgagttaagctgcaaaacagtgggtt |
42574686 |
T |
|
| Q |
218 |
gcattctgtaattatgagaaaagctttgagaaagcaatggtcccaacatgtgaaattggatattggtctgaactctgaatcagtgaactgcccaatagtt |
317 |
Q |
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| T |
42574685 |
gcattctgtaattatgagaaaagctttgagaaagcaatggtcccaacatgtgaaattggatattggtctgaactctgaatcagtgaactgcccaatagtt |
42574586 |
T |
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| Q |
318 |
ttgaaatttacaagagtggaattaaggttgttgcaggagaagggctactggattttagaggggaaaaagatattatgttggaagttgttttgcagaagtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42574585 |
ttgaaatttacaagagtggaattaaggttgttgcaggagaagggctactgga--ttagaggggaaaaagatattatgttggaagttgttttgcagaagtt |
42574488 |
T |
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| Q |
418 |
gagaggtcatgtctctttgtaatgtggggg |
447 |
Q |
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| T |
42574487 |
gagaggtcatgtctctttgtaatgtggggg |
42574458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 560 - 814
Target Start/End: Complemental strand, 42573225 - 42572971
Alignment:
| Q |
560 |
gtttccttccatttgcgcctcttttctatgtatttaatgtatttaagtttatgacaagaattagcttgaacatatccaaagcaccaactggatcatgtat |
659 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42573225 |
gtttccttccatttgtgcctcttttctatgtatttaatgtatttaagtttatgacaagaattagcttgaacatatccaaagcaccaactggatcatgtat |
42573126 |
T |
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| Q |
660 |
tgtttaaggactcaagaccacattgcatctttagaaaaagaataaatcaatgctaaaatgagtagcatagcacaaacaaccagttcaaggaactaaactc |
759 |
Q |
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| T |
42573125 |
tgtttaaggactcaagaccacattgcatctttagaaaaagaataaatcaatgctaaaatgagtagcatagcacaaacaaccagttcaaggaactaaactc |
42573026 |
T |
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| Q |
760 |
accataatcttattattcaattcccacgatatcttagtgttccaaatatccttca |
814 |
Q |
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| T |
42573025 |
accataatcttattattcaattcccacgatatcttagtgttccaaatatccttca |
42572971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 475 - 564
Target Start/End: Complemental strand, 42574445 - 42574359
Alignment:
| Q |
475 |
aggactatcctgcctgcatcgtcatcttactgctacataattattatgcggtagaaattgttggtattaataataatacctagtggtttc |
564 |
Q |
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| T |
42574445 |
aggactatcctgccttcatcgtcatcttgctgctacataatcattatgcggtagaaattgttggtattaat---aatacctagtggtttc |
42574359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 42578473 - 42578365
Alignment:
| Q |
117 |
aaaggaatagcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagttaagctgcaaaacagtgggt |
216 |
Q |
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||||| ||||||||||||| || ||||||||||||| |||||||||||||||| |||| | |||||| ||| |||||| ||||||||||||| ||||||| |
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| T |
42578473 |
aaagggatagcatgcaaacccagatattttgaggaaattaaagtcaggaagtt-actatatggtttagagtgggatgaattaagctgcaaaagagtgggt |
42578375 |
T |
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| Q |
217 |
tgcattctgt |
226 |
Q |
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|| ||||||| |
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| T |
42578374 |
tgaattctgt |
42578365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 708 - 770
Target Start/End: Complemental strand, 42577891 - 42577829
Alignment:
| Q |
708 |
aatgctaaaatgagtagcatagcacaaacaaccagttcaaggaactaaactcaccataatctt |
770 |
Q |
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| T |
42577891 |
aatgctaaaatgagtagcataacataaacaaccagttaaatgaactaaactcaccataatctt |
42577829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 42571240 - 42571179
Alignment:
| Q |
18 |
caggagcaattttcccaagaggagtacttatgagaggatgaacaacccaagaaaatgcactt |
79 |
Q |
| |
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|||||||| |||||| |||||||||||||| | ||||| ||| ||||||||||||||||||| |
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| T |
42571240 |
caggagcagttttcctaagaggagtacttacgggaggaagaataacccaagaaaatgcactt |
42571179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 42609291 - 42609222
Alignment:
| Q |
129 |
tgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagtta |
198 |
Q |
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||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||| | |||||| |
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| T |
42609291 |
tgcaaacccaaacattttgaggaacttgtagtcaggaagttgattaaacggtttatagtagaacgagtta |
42609222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 715 - 767
Target Start/End: Complemental strand, 42570698 - 42570646
Alignment:
| Q |
715 |
aaatgagtagcatagcacaaacaaccagttcaaggaactaaactcaccataat |
767 |
Q |
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||||||||| ||||||| |||||||||||| |||| ||||||||||||||||| |
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| T |
42570698 |
aaatgagtaacatagcataaacaaccagttaaaggtactaaactcaccataat |
42570646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 668
Target Start/End: Complemental strand, 42570951 - 42570903
Alignment:
| Q |
620 |
ttagcttgaacatatccaaagcaccaactggatcatgtattgtttaagg |
668 |
Q |
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||||||||| | ||||||||||||||||||||||||| ||| ||||||| |
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| T |
42570951 |
ttagcttgatcctatccaaagcaccaactggatcatggattatttaagg |
42570903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 763
Target Start/End: Complemental strand, 42594572 - 42594525
Alignment:
| Q |
716 |
aatgagtagcatagcacaaacaaccagttcaaggaactaaactcacca |
763 |
Q |
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||||| |||||||| | ||||||||| ||||||||||||||||||||| |
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| T |
42594572 |
aatgactagcatagtataaacaaccaattcaaggaactaaactcacca |
42594525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 27868968 - 27869065
Alignment:
| Q |
117 |
aaaggaatagcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaacggtttaaagtaggatgagttaagctgcaaaacagtgg |
214 |
Q |
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| T |
27868968 |
aaagggatagcatgcaaaccctgaaatttttaggaacttgtagtcaggaagttgattaaacagtttatagtagaatgagttaagctgcaaaacagtgg |
27869065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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