View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_67 (Length: 327)
Name: NF6131_high_67
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_67 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 36920984 - 36920713
Alignment:
| Q |
11 |
cagagagcaagagccataaagaataacagagaaaataggaatgaaataaagtaacctgaatcagtgttaacagtactaacaagctgaagagaaactcctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36920984 |
cagagagcaagagccataaagaataacagagaaaataggaatgaaataaagtaacctgaatcagtgttaacagtactaacaagctgaagagaaactcctt |
36920885 |
T |
|
| Q |
111 |
ttcccacaaactcatgaagaccatcaagcatggaggcagtgaagtcgttgaagtccaacacacttttcttcatcagcacaaccgtcccttcaacttggtg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36920884 |
ttcccacaaactcatgaagaccatcaagcatggaggcagtgaagtcgttgaagtccaacacacttttcttcatcagcacaaccgtcccttcaacttggtg |
36920785 |
T |
|
| Q |
211 |
gcggttgcttttgtctccggtgaaagcattgagaatgttgtgcaacattttccgagaaaagcagcaaccttg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
36920784 |
gcggttgcttttgtctccggtgaaagcattgagaatgttgtgcaacattttccgagaaaaacagtaaccttg |
36920713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 31309778 - 31309678
Alignment:
| Q |
11 |
cagagagcaagagccataaagaataacagagaaaataggaatgaaataaagtaacctgaatcagtgttaacagtactaacaagctgaagagaaactcctt |
110 |
Q |
| |
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|||||| ||||| ||||||||| |||| |||| ||||||||| | |||| |||||||||| |||||||||| |||| ||||||||| ||||||||||| |
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| T |
31309778 |
cagagaacaagaagcataaagaa-aacacagaacataggaatgtagtaaactaacctgaattagtgttaacaacactatcaagctgaatagaaactcctt |
31309680 |
T |
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| Q |
111 |
tt |
112 |
Q |
| |
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|| |
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| T |
31309679 |
tt |
31309678 |
T |
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