View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_69 (Length: 322)
Name: NF6131_high_69
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_69 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 17771763 - 17771458
Alignment:
| Q |
1 |
cataggtcctccattacgttcatttcctcttaatgaaagttacatgttcatggnnnnnnngtatgtagttttgaattatgctcccggagaggagaagaaa |
100 |
Q |
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| T |
17771763 |
cataggtcctccattacgttcatttcctcttaatgaaagttacatgttcatgaaaaaaaagtatgtagttttgaattatgctcccggagaggagaagaaa |
17771664 |
T |
|
| Q |
101 |
gatattactaatggaccgaatcgtattattgacgggtttccaatgttagataacacgatatttgaaaatggaatcgattgtgcctttgacatcaaacaca |
200 |
Q |
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| T |
17771663 |
gatattactaatggaccgaatcgtattattgacgggtttccaatgttagataacacgatatttgaaaatggaatcgattgtgccttggacatcaaacaca |
17771564 |
T |
|
| Q |
201 |
acaaggcatttatcttctctgggaatcaatgtgccaaaataaaatacgctccaaattcaacagactccagattactatcaggtcctattccgatcgctgc |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17771563 |
acaaggcattcatcttctctgggaatcaatgtgccaaaataaaatacgctccaaattcaacagactccagattactatcaggtcctattccaatcgctgc |
17771464 |
T |
|
| Q |
301 |
catgtt |
306 |
Q |
| |
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|||||| |
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| T |
17771463 |
catgtt |
17771458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 26819340 - 26819265
Alignment:
| Q |
160 |
atttgaaaatggaatcgattgtgcctttgacatcaaacacaacaaggcatttatcttctctgggaatcaatgtgcc |
235 |
Q |
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| T |
26819340 |
atttgaacatggaatagattgtgcctttgagacccaacacaatgaggcattcatcttttctggaaatcattgtgcc |
26819265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 27232269 - 27232344
Alignment:
| Q |
160 |
atttgaaaatggaatcgattgtgcctttgacatcaaacacaacaaggcatttatcttctctgggaatcaatgtgcc |
235 |
Q |
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||||||| ||||||| |||||||||||||| | | ||||||| ||||||| ||||| ||||| ||||| |||||| |
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| T |
27232269 |
atttgaacatggaatagattgtgcctttgagacccaacacaatgaggcattcatcttttctggaaatcactgtgcc |
27232344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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