View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_71 (Length: 320)

Name: NF6131_high_71
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_71
NF6131_high_71
[»] chr1 (2 HSPs)
chr1 (1-306)||(42099850-42100156)
chr1 (267-312)||(52036164-52036209)
[»] chr3 (6 HSPs)
chr3 (268-312)||(43721100-43721144)
chr3 (271-312)||(8627846-8627887)
chr3 (272-311)||(46807962-46808001)
chr3 (268-312)||(38341259-38341303)
chr3 (268-308)||(50716927-50716967)
chr3 (268-308)||(50795880-50795920)
[»] chr8 (3 HSPs)
chr8 (268-312)||(34664585-34664629)
chr8 (268-312)||(40525027-40525071)
chr8 (268-312)||(5338483-5338527)
[»] chr7 (3 HSPs)
chr7 (268-312)||(46273046-46273090)
chr7 (268-312)||(30714161-30714205)
chr7 (269-311)||(39972238-39972280)
[»] chr5 (4 HSPs)
chr5 (271-312)||(36339475-36339516)
chr5 (271-312)||(18342130-18342171)
chr5 (267-308)||(37883124-37883165)
chr5 (272-312)||(38363685-38363725)
[»] chr6 (1 HSPs)
chr6 (268-310)||(7423584-7423626)
[»] chr4 (1 HSPs)
chr4 (268-308)||(53893461-53893501)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 42100156 - 42099850
Alignment:
Q  1 taaattgtaatcacatatttgtacaatcattcataaggaaatttgaccacttttcgccgtagatttgggtcaaaattgttgtttcaggatcgtaaatctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42100156 taaattgtaatcacatatttgtacaatcattcataaggaaatctgaccacttttcgccgtagatttgggtcaaaattgttgtttcaggatcgtaaatctt 42100057  T
Q  101 gaatattattgtgtgaagttaattagaagcatctacaaagataagtagaaccaacacatttgggggaaaatggtgaattgtataaagaaaatgtaggttc 200  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||  |||||||    
T  42100056 gaatataattgtgtgaagttaattagaagcatctacgaagataaatagaaccaacacatttgggggaaaatggtgaactgtataaagaaaaactaggttc 42099957  T
Q  201 gttttagaatattttg-nnnnnnnnactaaatgatagaataaattggccactcatttatttatccaatgactattactttttccactctatggccttctc 299  Q
    ||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |||| | ||| |||||||    
T  42099956 gttttagaatattttgtttaagtttactaaatgatggaataatttggccactcatttatttatctaatgactattacttttcccacccgatgaccttctc 42099857  T
Q  300 gcacgcc 306  Q
    |||||||    
T  42099856 gcacgcc 42099850  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 52036164 - 52036209
Alignment:
Q  267 tgactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    |||||||||||||| ||| | |||||||||||||||||| ||||||    
T  52036164 tgactattacttttcccattttatggccttctcgcacgctctatgc 52036209  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 43721100 - 43721144
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  43721100 gactattactttttccaccctatggccttctcgcacgccctatgc 43721144  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 8627887 - 8627846
Alignment:
Q  271 tattactttttccactctatggccttctcgcacgccctatgc 312  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8627887 tattactttttccaccctatggccttctcgcacgccctatgc 8627846  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 46807962 - 46808001
Alignment:
Q  272 attactttttccactctatggccttctcgcacgccctatg 311  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  46807962 attacttttcccaccctatggccttctcgcacgccctatg 46808001  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 38341259 - 38341303
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||    
T  38341259 gactattacttttcccaccccatgaccttctcgcacgccctatgc 38341303  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 50716967 - 50716927
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccct 308  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  50716967 gactattactttttccaccctatggccttctcccgcgccct 50716927  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 50795880 - 50795920
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccct 308  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  50795880 gactattactttttccaccctatggccttctcccgcgccct 50795920  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 34664629 - 34664585
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  34664629 gactattacttttaccaccctatggccttctcgcacgccctatgc 34664585  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 40525071 - 40525027
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||    
T  40525071 gactattatttttcccaccctatggccttctcgcacgccctatgc 40525027  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 5338483 - 5338527
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    |||||||| |||| |||  ||||||||||||||||||||||||||    
T  5338483 gactattaattttcccatcctatggccttctcgcacgccctatgc 5338527  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 46273090 - 46273046
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  46273090 gactattacttttcccaccctatggccttctcgcacgccctatgc 46273046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 30714205 - 30714161
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctatgc 312  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||    
T  30714205 gactattacttttaccaccctatggccttctcacacgccctatgc 30714161  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 39972238 - 39972280
Alignment:
Q  269 actattactttttccactctatggccttctcgcacgccctatg 311  Q
    ||||||||||||||| | |||||||||||| ||||||||||||    
T  39972238 actattactttttcctccctatggccttctagcacgccctatg 39972280  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 36339475 - 36339516
Alignment:
Q  271 tattactttttccactctatggccttctcgcacgccctatgc 312  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  36339475 tattactttttccaccctatggccttctcgcgcgccctatgc 36339516  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 18342171 - 18342130
Alignment:
Q  271 tattactttttccactctatggccttctcgcacgccctatgc 312  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  18342171 tattacttttcccaccctatggccttctcgcgcgccctatgc 18342130  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 37883124 - 37883165
Alignment:
Q  267 tgactattactttttccactctatggccttctcgcacgccct 308  Q
    ||||||||||||||||||| |||| |||||||||| ||||||    
T  37883124 tgactattactttttccaccctattgccttctcgcgcgccct 37883165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 38363685 - 38363725
Alignment:
Q  272 attactttttccactctatggccttctcgcacgccctatgc 312  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  38363685 attactttttccaccatatgaccttctcgcacgccctatgc 38363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 7423626 - 7423584
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccctat 310  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  7423626 gactattactttttccactctatggtcttctcccgcgccctat 7423584  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 53893461 - 53893501
Alignment:
Q  268 gactattactttttccactctatggccttctcgcacgccct 308  Q
    ||||||||||||| |||| ||||||||||||| ||||||||    
T  53893461 gactattacttttcccaccctatggccttctcccacgccct 53893501  T

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