View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_72 (Length: 320)
Name: NF6131_high_72
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_72 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 75 - 311
Target Start/End: Complemental strand, 53121301 - 53121060
Alignment:
| Q |
75 |
ttaaattaatataaataacatttatgtgctat---gtattgacccactgtctagtaactcttatacgattacaaacgtaacatattacttttatacaccg |
171 |
Q |
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| T |
53121301 |
ttaaattaatataaataacatttatgtgctattatgtattaacccactgtctag--actcttatacgattacaaacgtaacatattacttttatacaccg |
53121204 |
T |
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| Q |
172 |
tcttttaaaagaacagaaatgttgtgtcatgaaaaacatcacaaatgcattccgagtgaaatgacaagtttaaagtcaatcatatt----aattcaataa |
267 |
Q |
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| T |
53121203 |
tcttttaaaagaacagaaatgttgtgtcatgaaaaacatcacaaatgcattccgagtgaaatgacaagtttaaagtcaatcatattaattaattcaataa |
53121104 |
T |
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| Q |
268 |
tcattcgtgtatggttagccatgctctttattggctactttcat |
311 |
Q |
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| T |
53121103 |
ccatccgtgtatggttagccatgctctttattggctactttcat |
53121060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 53122607 - 53122531
Alignment:
| Q |
7 |
atccccgcaacaagctcatcatattcatacaaagaagattgaataccatattaagagcaaaagatgtattaaattaa |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
53122607 |
atccccgcaacaagctcatcatattcatacaaagaagattgaataccaaaataagagtaaaagatgtattaaattaa |
53122531 |
T |
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