View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_78 (Length: 313)
Name: NF6131_high_78
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_78 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 5113550 - 5113841
Alignment:
| Q |
16 |
aacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatgacgat |
115 |
Q |
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| T |
5113550 |
aacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatgacgat |
5113649 |
T |
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| Q |
116 |
gaggatgacgacgagctagaacagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggacaactctttggaatgcttataagaagaa |
215 |
Q |
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| T |
5113650 |
gaggatgacgacgagctagaagagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggacaactctttggaatgcttat---aagaa |
5113746 |
T |
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| Q |
216 |
catgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgattaacttataaccttgtattcatctcactc |
310 |
Q |
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| T |
5113747 |
catgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgcgattaacttataaccttgtattcttttcactc |
5113841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 10463713 - 10463668
Alignment:
| Q |
29 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
74 |
Q |
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| T |
10463713 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
10463668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 38650711 - 38650772
Alignment:
| Q |
221 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
282 |
Q |
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| T |
38650711 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacaaagaattattgaacatgtgatt |
38650772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 38625665 - 38625726
Alignment:
| Q |
221 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
282 |
Q |
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|||| ||||||| |||||||| ||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
38625665 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacagagaattattgaacatgtgatt |
38625726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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