View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_80 (Length: 306)

Name: NF6131_high_80
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_80
NF6131_high_80
[»] chr2 (9 HSPs)
chr2 (16-291)||(16657638-16657913)
chr2 (89-290)||(7542071-7542272)
chr2 (70-262)||(43625238-43625430)
chr2 (70-280)||(14703234-14703444)
chr2 (70-295)||(12234515-12234740)
chr2 (70-275)||(12258718-12258923)
chr2 (54-295)||(16662109-16662350)
chr2 (72-258)||(11999235-11999421)
chr2 (72-258)||(12245560-12245746)
[»] chr7 (25 HSPs)
chr7 (15-291)||(8659134-8659410)
chr7 (16-291)||(10494495-10494770)
chr7 (16-291)||(8654222-8654497)
chr7 (16-291)||(1301232-1301507)
chr7 (55-291)||(13333577-13333813)
chr7 (16-291)||(8667191-8667466)
chr7 (69-281)||(27831006-27831218)
chr7 (63-291)||(3147083-3147311)
chr7 (70-270)||(17267765-17267965)
chr7 (70-280)||(17260067-17260277)
chr7 (71-291)||(8646704-8646924)
chr7 (70-262)||(6789338-6789530)
chr7 (70-263)||(8585855-8586048)
chr7 (72-152)||(8616509-8616589)
chr7 (81-268)||(8570148-8570335)
chr7 (70-137)||(8673896-8673963)
chr7 (211-293)||(7877852-7877934)
chr7 (211-258)||(8545600-8545647)
chr7 (211-293)||(29581960-29582042)
chr7 (211-251)||(8609884-8609924)
chr7 (103-161)||(8664919-8664977)
chr7 (211-293)||(29577791-29577873)
chr7 (211-272)||(8576293-8576354)
chr7 (81-161)||(8576163-8576243)
chr7 (106-166)||(8609779-8609839)
[»] chr1 (4 HSPs)
chr1 (15-291)||(4678679-4678954)
chr1 (70-291)||(15594860-15595081)
chr1 (108-260)||(34466945-34467089)
chr1 (79-160)||(52549264-52549345)
[»] chr4 (3 HSPs)
chr4 (16-256)||(9336047-9336287)
chr4 (57-291)||(30775065-30775299)
chr4 (69-182)||(35132282-35132395)
[»] chr5 (1 HSPs)
chr5 (77-291)||(28219751-28219965)
[»] chr8 (1 HSPs)
chr8 (70-291)||(43744642-43744863)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 16657913 - 16657638
Alignment:
Q  16 ccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  16657913 ccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcacgaagacaattctcaacagttttcatacactcattgaaaagatccatat 16657814  T
Q  116 taatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16657813 taatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctcaacagtggtgacaaaagcaaaagagagtgt 16657714  T
Q  216 cctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  16657713 cctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttattcttc 16657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 89 - 290
Target Start/End: Original strand, 7542071 - 7542272
Alignment:
Q  89 tcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctac 188  Q
    |||||||||| || ||||| |||||||| || |||||||||||||| |   |||| ||||||||||||||||| || |||||||||||||||||||| |     
T  7542071 tcatacactcgttaaaaagatccatattcatctcctcaaacttggccctattgatcgatgaagaaaagtcaatgccttgaaataaagaatctacctcaat 7542170  T
Q  189 agtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattc 288  Q
    |||||  |||| |   ||||| ||||  || |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| || |||    
T  7542171 agtggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttc 7542270  T
Q  289 tt 290  Q
    ||    
T  7542271 tt 7542272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 262
Target Start/End: Original strand, 43625238 - 43625430
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| ||| ||||||||||| |||||| |||||||| |||||||| ||||| ||||| |||||||| |||||||||||| | |||||||| ||  | |    
T  43625238 agacaactcttaacagttttcaaacactcgttgaaaagatccatatttatttcatcaaatttggcacgagtgattgatgaaaagaagtcaataccacgga 43625337  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttg 262  Q
    |||||||||||||||| | |||| |||   |||||||||| |||||||| ||| | ||||| ||||| ||||||||||| || | ||||||||    
T  43625338 ataaagaatctacctcaatagtgctgaacgaagcaaaagacagtgtcctttttcctctctcgcatgccgttctcaaccttcttatggctcttg 43625430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 70 - 280
Target Start/End: Original strand, 14703234 - 14703444
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| |||||||| | |||| ||||||||| |||| ||||||||| ||||| ||||||||||| |   |||| ||||||||||||||||| |  ||||    
T  14703234 agacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaaacttggccctattgatcgatgaagaaaagtcaatgcattgaa 14703333  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccc 269  Q
    |||||| ||||||||| | ||||| |||||     ||||| ||||| || ||||||||||| || || |||||||| ||||| |||||| ||||||| ||    
T  14703334 ataaagcatctacctcaatagtggcgacaacttggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctccttaaggcttttggatttcc 14703433  T
Q  270 acttatgtcca 280  Q
    ||| |||||||    
T  14703434 actaatgtcca 14703444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 295
Target Start/End: Original strand, 12234515 - 12234740
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| |||||||| | |||||||||||| | | ||| |||||||| ||||||||||||||||| |   |||| ||||||||||| ||||| || | ||    
T  12234515 agacaactctcaacaatcttcatacactcaataagaagatccatattcatttcctcaaacttggccctattgatcgatgaagaaaaatcaatgccttcaa 12234614  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccc 269  Q
    |||||||||||||||| |  || |  |||| |   ||||| | ||  || |||||||||||||| |||||||| ||||||||||||||| ||||||| ||    
T  12234615 ataaagaatctacctcaatggttgcaacaacaaggaaagacaatgatctttttgccctctcacaagcagttcttaacctcctcaaggcttttggatttcc 12234714  T
Q  270 acttatgtccaccttattcttcctat 295  Q
    ||| |||||||| || ||||| ||||    
T  12234715 actcatgtccacttttttctttctat 12234740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 275
Target Start/End: Complemental strand, 12258923 - 12258718
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| |||||||||| ||||| || ||||||||||| |||| ||| ||||||||||||||||||||  ||||||||| |||||| ||||| || | |     
T  12258923 agacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctcaaacttggcacgattgattgatgcagaaaaatcaatgccatcac 12258824  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccc 269  Q
    |||||||||||| ||| | ||| |  |||| |  | |||| ||||  || ||||| |||||||| || ||| |||| |||||||| ||||||||||| ||    
T  12258823 ataaagaatctatctcaatagttgcaacaacaagataagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaaagctcttggatttcc 12258724  T
Q  270 acttat 275  Q
    ||||||    
T  12258723 acttat 12258718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 295
Target Start/End: Complemental strand, 16662350 - 16662109
Alignment:
Q  54 catctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaa 153  Q
    ||||||||||||  | | |||| |||||||| | ||||||||||| || |||||| ||||||| ||||| ||||||||| |||| |||| ||||| |||     
T  16662350 catctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggcccatattgatttcttcaaacttgacacgagtgagtgatgtagag 16662251  T
Q  154 aagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctca 253  Q
    ||||||||  |||   ||||| |||| | ||| | || |||||| ||    |||||||||||||| || ||| | ||||| | |||||||||||||||||    
T  16662250 aagtcaatgtcctcgtataaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaacctcctca 16662151  T
Q  254 aggctcttggattcccacttatgtccaccttattcttcctat 295  Q
    ||||||||||||||| | | || ||||| || ||||||||||    
T  16662150 aggctcttggattcctagtgatatccactttgttcttcctat 16662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 11999235 - 11999421
Alignment:
Q  72 acaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaat 171  Q
    |||| |||||||||| || ||||| ||||| | ||| || | ||| | |||||||||||| || ||  |||| ||||||||||| ||||| || ||||||    
T  11999235 acaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaaactttgcccgattgatggatgaagaaaaatcaatgccttgaaat 11999334  T
Q  172 aaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggct 258  Q
    |||||||||||||| | ||| |  |||| |  ||| || ||| | || |||||||||||||| ||||||||||||||||||||||||    
T  11999335 aaagaatctacctcaatagttgcaacaacaagaaatgatagtattctttttgccctctcacaagcagttctcaacctcctcaaggct 11999421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 12245746 - 12245560
Alignment:
Q  72 acaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaat 171  Q
    |||| |||||||||| || ||||| ||||| | ||| || | ||| | |||||||||||| || ||  |||| ||||||||||| ||||| || ||||||    
T  12245746 acaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaaactttgcccgattgatggatgaagaaaaatcaatgccttgaaat 12245647  T
Q  172 aaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggct 258  Q
    |||||||||||||| | ||| |  |||| |  ||| || ||| | || |||||||||||||| ||||||||||| ||||||||||||    
T  12245646 aaagaatctacctcaatagttgcaacaacaagaaacgaaagtattctttttgccctctcacaagcagttctcaatctcctcaaggct 12245560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 8659134 - 8659410
Alignment:
Q  15 accacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccata 114  Q
    |||||||||||||||||  || ||||||||||  || || || |||||||| |  |||||| ||||||||||||||||||||||||| ||||| ||||||    
T  8659134 accacccacaagaacaatatcgtcaatatcactcatctgtatttttgaatcgctaagacaactctcaacagttttcatacactcattaaaaagatccata 8659233  T
Q  115 ttaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtg 214  Q
    || |||||||||||| ||||||| |||||| ||||| | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  8659234 ttcatttcctcaaacctggcacgagtgattaatgaacagaagtctattccctgaaataaagaatcgacctcaacagtggtgacaaaagcaaaagagagtg 8659333  T
Q  215 tcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttc 291  Q
    ||||||||||||||||||| ||||||||||||||||| |||| | |||| || ||||| |||||||| |||||||||    
T  8659334 tcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtccactttattcttc 8659410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 10494770 - 10494495
Alignment:
Q  16 ccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatat 115  Q
    ||||||||||||||||  ||||||||||||    |||  ||||||||||| | ||||||| | |||||| | |||||||||||  |||||| ||| ||||    
T  10494770 ccacccacaagaacaatatcatcaatatcattcttgtatatctttgaatccctgagacaactgtcaacaatattcatacactcgatgaaaaagtctatat 10494671  T
Q  116 taatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgt 215  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||  |||||||| ||| ||||| || ||||||||||||| |||||||||| |    
T  10494670 taatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagagagtat 10494571  T
Q  216 cctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttc 291  Q
    ||| |||||||||||||| ||||||||||||||||| |||| | ||||||||||||| |||||||| |||||||||    
T  10494570 cctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttc 10494495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 8654222 - 8654497
Alignment:
Q  16 ccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatat 115  Q
    |||||||| || ||||| ||||||||||||    |||  ||||||||||| | ||||||| | |||||| | || |||||||||||||||| ||||||||    
T  8654222 ccacccacgagtacaacatcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatat 8654321  T
Q  116 taatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgt 215  Q
    ||||||||||||| || ||||| |||||||||||||||||||| ||||||  |||||||| ||||||||| |||||||||||||||| |||||||||| |    
T  8654322 taatttcctcaaatttagcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacctcaacagtggtgacaaaagtaaaagagagtat 8654421  T
Q  216 cctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttc 291  Q
    ||| |||||||||||||| ||||||||||||||||| |||| | |||| || || || || ||||| |||||||||    
T  8654422 cctttttgccctctcacaggcagttctcaacctccttaaggattttgggttaccgctaatttccactttattcttc 8654497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 1301232 - 1301507
Alignment:
Q  16 ccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatat 115  Q
    ||||||||||||||||  ||||| |||||||  |||   || |||||||| |  |||||| ||||||| |||||  |||||||||| ||||| |||||||    
T  1301232 ccacccacaagaacaatatcatcgatatcactcatgcatatttttgaatcgctaagacaactctcaacggtttttgtacactcattaaaaagatccatat 1301331  T
Q  116 taatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgt 215  Q
    |||||||||||||||||||||| |||||| ||||| | ||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||    
T  1301332 taatttcctcaaacttggcacgagtgattaatgaacagaagtcgattccctgaaataaagaatcgacctcaacggtggtgactaaagcaaaagagagtgt 1301431  T
Q  216 cctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttc 291  Q
    ||| |||||||||||||| ||| ||||||||||||| |||| | |  | || ||||| |||||||| |||||||||    
T  1301432 cctttttgccctctcacacgcaattctcaacctccttaaggatttctggttaccactaatgtccactttattcttc 1301507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 55 - 291
Target Start/End: Complemental strand, 13333813 - 13333577
Alignment:
Q  55 atctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaa 154  Q
    ||||||||||| | ||||||| | |||||| | |||||||||||  |||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  13333813 atctttgaatccctgagacaactgtcaacaatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaa 13333714  T
Q  155 agtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaa 254  Q
    |||| ||||||  |||||||| |||||| || |||||||||||||||| ||| |||||| |||| ||| |||||||||| ||||||||||||||||| ||    
T  13333713 agtcgattcccataaataaagcatctacttcaacagtggtgacaaaagaaaaggagagtatccttttttccctctcacaggcagttctcaacctccttaa 13333614  T
Q  255 ggctcttggattcccacttatgtccaccttattcttc 291  Q
    || | |||| |||||||| || || || |||||||||    
T  13333613 ggattttgggttcccactgatatcgacgttattcttc 13333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 8667191 - 8667466
Alignment:
Q  16 ccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatat 115  Q
    ||||| ||||| ||||| ||||||||||||    |||  ||||||||||| | ||||||  | |||||  | ||||||||||||||||||| |||||| |    
T  8667191 ccaccgacaagtacaacatcatcaatatcattcttgtatatctttgaatccctgagacaggtgtcaactatattcatacactcattgaaaaagtccatgt 8667290  T
Q  116 taatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgt 215  Q
    ||| ||||||||| || ||||| || ||||||||| ||||||| ||||||  |||||||| ||||||||| |||||||| |||||||||||||||||| |    
T  8667291 taagttcctcaaatttagcacgagtaattgatgaacaaaagtcgattcccgtaaataaagcatctacctcaacagtggtaacaaaagcaaaagagagtat 8667390  T
Q  216 cctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttc 291  Q
    ||| |||||||||||||| ||||||||||||||||| |||| | |||| |||  ||| |||||||| |||||||||    
T  8667391 cctttttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtccactttattcttc 8667466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 69 - 281
Target Start/End: Complemental strand, 27831218 - 27831006
Alignment:
Q  69 gagacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctga 168  Q
    ||||||| |||||||||| | |||||| |||||||||||||||||||| |||||||||||||| ||||| |||||   |||| | |||||||| |||| |    
T  27831218 gagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcattgaaaagaagtcaatgccctca 27831119  T
Q  169 aataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcc 268  Q
    ||||| | ||||| ||| | ||| ||| ||| || ||||||||||||||| |||||| ||||||||   ||||||| |||||||||||||||||| ||||    
T  27831118 aataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcacattaggttctcagcctcctcaaggctcttgggttcc 27831019  T
Q  269 cacttatgtccac 281  Q
    |||| ||||||||    
T  27831018 cactaatgtccac 27831006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 291
Target Start/End: Original strand, 3147083 - 3147311
Alignment:
Q  63 atcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaatt 162  Q
    |||| ||| |||| ||| |||||||| || ||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||| | ||||||| |    
T  3147083 atcagcgaaacaactcttaacagtttccaaacactcagtgaaaagatccatattgatttcctcaaacttggcacgagtgattgatgaaaataagtcaaat 3147182  T
Q  163 ccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttg 262  Q
    ||||||||||||||||||| ||| |  |||||||  | ||||||||| ||| | |  ||||| || ||||| || ||| |||||||||| ||||||||||    
T  3147183 ccctgaaataaagaatctatctcaatggtggtgatgacagcaaaagatagtattcgttttgctctttcacacgccgttttcaacctccttaaggctcttg 3147282  T
Q  263 gattcccacttatgtccaccttattcttc 291  Q
      ||| |||| ||||| ||||| ||||||    
T  3147283 agttctcactaatgtctaccttgttcttc 3147311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 270
Target Start/End: Original strand, 17267765 - 17267965
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    ||||| ||||||||| | | ||| |||||||  |||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||  |||| ||    
T  17267765 agacacttctcaacaatctccatgcactcatcaaaaaggtccatattgatttcctcaaacttggcacgagtgattgacgaagaaaaatcaacacccttaa 17267864  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccc 269  Q
    ||||||  |||||||| ||| |||| ||| | || ||||| |||||||| |||||  | ||||||||||||||||||||||||| |||| |||| |||||    
T  17267865 ataaagcgtctacctcaacattggtcacagaggcgaaagaaagtgtcctttttgctttttcacatgcagttctcaacctcctcatggcttttgggttccc 17267964  T
Q  270 a 270  Q
    |    
T  17267965 a 17267965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 70 - 280
Target Start/End: Original strand, 17260067 - 17260277
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    ||||| ||||||||| | | ||| |||||||  |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| | ||  |||| ||    
T  17260067 agacacttctcaacaatctccatgcactcataaaaaaggtccatattgatttcttcaaacttggcacgagtgattgacgaagaaaaattaacacccttaa 17260166  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccc 269  Q
    ||||||  |||||||| ||| |||| ||| | |||||||| |||||||| |||||  | ||||||||||||||||||||||| |||||| |||| |||||    
T  17260167 ataaagcgtctacctcaacattggtcacagaggcaaaagaaagtgtcctttttgctttttcacatgcagttctcaacctccttaaggcttttgggttccc 17260266  T
Q  270 acttatgtcca 280  Q
    | | |||||||    
T  17260267 aataatgtcca 17260277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 8646704 - 8646924
Alignment:
Q  71 gacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaa 170  Q
    ||||| |||||||||||| || ||| ||  |||| || |||||||| ||| | ||||| |||||||| ||||||||||||  ||||||||| || | |||    
T  8646704 gacaactctcaacagtttccaaacattcgatgaacagatccatattgattgcgtcaaatttggcacgagtgattgatgaaataaagtcaatgccattaaa 8646803  T
Q  171 taaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccca 270  Q
    |||||||||||  || |  ||||||  | |||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||  || |||    
T  8646804 taaagaatctaattcaatggtggtgcaagaagcaaaagatagtgtcctttttgctctctcgcatgccgttctcaacctccttaaggctcttgagtttcca 8646903  T
Q  271 cttatgtccaccttattcttc 291  Q
     | ||||||||||| ||||||    
T  8646904 gtaatgtccaccttgttcttc 8646924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 262
Target Start/End: Original strand, 6789338 - 6789530
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| ||||||| || |||||||||||||| ||||  |||||||| ||||||||||||||||| || || | |||||||   ||||| || |||||||    
T  6789338 agacaactctcaacggtcttcatacactcattaaaaatatccatattgatttcctcaaacttggcccgagtaagtgatgaaatgaagtcgatgccctgaa 6789437  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttg 262  Q
    ||||||| |||||||| | ||| ||||| | | |||||||||||  ||| || ||||| ||||| |||||||||||||| || ||||| ||||    
T  6789438 ataaagagtctacctcaatagtagtgacgacaacaaaagagagtacccttttggccctttcacacgcagttctcaaccttcttaaggcccttg 6789530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 263
Target Start/End: Complemental strand, 8586048 - 8585855
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| |||||||||| || ||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||| || || |  |||| |     
T  8586048 agacaactctcaacagtatttatacactcattaaaaaggtccatattgatttcctcaaacttgacacgcgtgattgatgaagagaaatcgacgccctcac 8585949  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgg 263  Q
    ||||| |||| |  || | ||| ||||| ||    ||||| |||||||| |||||| | |||||||| ||||| |||| |||||| ||||||||    
T  8585948 ataaataatcaatttcaatagtagtgaccaatttgaaagaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaaagctcttgg 8585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 8616509 - 8616589
Alignment:
Q  72 acaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaaga 152  Q
    |||| |||||||||| || |||||||| || |||||||||||||| ||||||||||||||  |||| ||||||||||||||    
T  8616509 acaactctcaacagtctttatacactcgttaaaaaggtccatattgatttcctcaaacttaacacgagtgattgatgaaga 8616589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 8570148 - 8570335
Alignment:
Q  81 aacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatct 180  Q
    |||||||| ||||||||  |  || |||| |||||| ||||||||||||||||| ||||| |||||||||   ||||||||||||| | ||| || ||||    
T  8570148 aacagtttccatacacttttcaaagaggttcatattcatttcctcaaacttggcccgggttattgatgaactgaagtcaattcccttatatatagcatct 8570247  T
Q  181 acctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcc 268  Q
    | ||| |  ||||   ||  | || | || |||||||| |||||||||||||| || ||||| ||||||||||||||| |||| ||||    
T  8570248 agctcaattgtggcctcagtatcatatgaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcc 8570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 8673963 - 8673896
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacg 137  Q
    ||||||||||||||||||| || |||||| |||||||| |  ||||| ||||||||||||||||||||    
T  8673963 agacaattctcaacagtttccaaacactcgttgaaaagattgatattgatttcctcaaacttggcacg 8673896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 7877934 - 7877852
Alignment:
Q  211 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttcct 293  Q
    |||||||| || ||||||||||||||||||||||||||||| | ||| || || || ||||  |||||||| |||||||||||    
T  7877934 agtgtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcct 7877852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 8545600 - 8545647
Alignment:
Q  211 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggct 258  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  8545600 agtgtcctttttgccttctcacaggcagttctcaacctcctcaaggct 8545647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 29582042 - 29581960
Alignment:
Q  211 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttcct 293  Q
    ||||||||||||||||||||||| || ||||||| | |||| || ||| |||| |||||||| |||||||  || ||||||||    
T  29582042 agtgtcctctttgccctctcacaagctgttctcagcttccttaaagcttttgggttcccactaatgtccaaattgttcttcct 29581960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 8609884 - 8609924
Alignment:
Q  211 agtgtcctctttgccctctcacatgcagttctcaacctcct 251  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  8609884 agtgtcctctttgccctctcacaagcagtcctcaacctcct 8609924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 8664919 - 8664977
Alignment:
Q  103 aaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaat 161  Q
    |||||||||||||| |||||||||||| | ||||| || ||||||||| |||| |||||    
T  8664919 aaaaggtccatattgatttcctcaaacctcgcacgagttattgatgaacaaaattcaat 8664977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 29577873 - 29577791
Alignment:
Q  211 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttcct 293  Q
    |||| |||||||||||||||||| |||||||||| | |||| || ||| |||| |||  ||| |||||||| || ||||||||    
T  29577873 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcct 29577791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 8576293 - 8576354
Alignment:
Q  211 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccact 272  Q
    |||||||| |||||| | ||||| ||||||||||||||||| |||||| ||| |||| ||||    
T  8576293 agtgtcctttttgccttttcacaagcagttctcaacctccttaaggcttttgaattctcact 8576354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 8576163 - 8576243
Alignment:
Q  81 aacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaat 161  Q
    |||||| ||||||||||  |  || |||| |||||| ||||||||||||||||| ||||| ||||| ||| | ||||||||    
T  8576163 aacagtattcatacacttttcaaagaggttcatattcatttcctcaaacttggcccgggttattgaggaacagaagtcaat 8576243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 8609779 - 8609839
Alignment:
Q  106 aggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccct 166  Q
    |||||||| |||| || ||||||||| ||||| |||||||||||| |||| ||||| ||||    
T  8609779 aggtccatgttaagttgctcaaacttcgcacgagtgattgatgaacaaaaatcaataccct 8609839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 4678954 - 4678679
Alignment:
Q  15 accacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccata 114  Q
    |||||||||||||||||| |||||||||| ||    | |||||||||||||||  |||||| ||| |||||||| ||||||||| |||||||||||||||    
T  4678954 accacccacaagaacaacatcatcaatattactcccgcgcatctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccata 4678855  T
Q  115 ttaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtg 214  Q
    ||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| || ||||||||||    
T  4678854 ttaatttcctcaaacttggcacgagtaatagatgaagaaaagtctattccctgaaataaagaatcta-ctcaacagtggtgacaaaggcgaaagagagtg 4678756  T
Q  215 tcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatgtccaccttattcttc 291  Q
    |||||||||||||||| || ||||||||||||||||| |||| | |||  |||  ||| |||||||| |||||||||    
T  4678755 tcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttcttactaatgtccacattattcttc 4678679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 291
Target Start/End: Original strand, 15594860 - 15595081
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| |||||||  | |||||||| || || |||| |||||| || ||||| |||||||||| ||| || |  |||||| | |||||||| || | ||    
T  15594860 agacaactctcaactatcttcatacaatccttaaaaaagtccatgttgatttcttcaaacttggaacgagtaaccgatgaaaagaagtcaataccgttaa 15594959  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccc 269  Q
    ||||| |||||||||| |  || ||||||  || ||||||||||  ||| |||||||| || || ||||||||||| ||||||||||| ||||| |||||    
T  15594960 ataaacaatctacctcaatggtagtgacagtagtaaaagagagtaccctttttgccctttcgcacgcagttctcaatctcctcaaggcccttgggttccc 15595059  T
Q  270 acttatgtccaccttattcttc 291  Q
    | | || ||||| || ||||||    
T  15595060 agtaatatccactttgttcttc 15595081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 34467089 - 34466945
Alignment:
Q  108 gtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaa 207  Q
    ||||||||| |||||||||||||||||||| |||||||| |||   ||||||||| ||| | ||||||||||||  || ||||| | ||||||           
T  34467089 gtccatattgatttcctcaaacttggcacgagtgattgacgaatggaagtcaattacctcatataaagaatctatttcaacagtagcgacaaa------- 34466997  T
Q  208 gagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctct 260  Q
     ||||||||||||||||  |||| || |||||||||||||||||||| |||||    
T  34466996 -agagtgtcctctttgcattctcgcacgcagttctcaacctcctcaaagctct 34466945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 52549345 - 52549264
Alignment:
Q  79 tcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaa 160  Q
    |||||| | ||||||||||| || |||||||||||||| ||||||||||||||||| |   |||| ||||||||||| ||||    
T  52549345 tcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaaacttggccctattgatcgatgaagaaaaatcaa 52549264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 9336287 - 9336047
Alignment:
Q  16 ccacccacaagaacaacgtcatcaatatcaccaatgtgcatctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatat 115  Q
    ||||||||||||||||  |||||||||| ||   |||  ||||||||||| | ||||||  | |||||| | ||||||||||||||||||| |||||| |    
T  9336287 ccacccacaagaacaatatcatcaatattactcttgtatatctttgaatccctgagacaggtgtcaacaatattcatacactcattgaaaaagtccatgt 9336188  T
Q  116 taatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgt 215  Q
    ||| ||||||||| |||||||| |||||||||||||||||||| ||||||  |||||||| ||||||||| |||||||| |||||||||||||| ||| |    
T  9336187 taagttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacctcaacagtggtaacaaaagcaaaagacagtat 9336088  T
Q  216 cctctttgccctctcacatgcagttctcaacctcctcaagg 256  Q
    ||| |||||||||||||| ||||||||||||||||| ||||    
T  9336087 cctttttgccctctcacaggcagttctcaacctccttaagg 9336047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 30775065 - 30775299
Alignment:
Q  57 ctttgaatcaccgagacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaag 156  Q
    ||||||||||   |||||| |||||||||| |  ||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  30775065 ctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaaacttgacacgagtgattgatgaagaaaag 30775164  T
Q  157 tcaattccctgaaataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaagg 256  Q
    |||||  | |||||||||  ||||| ||| |||   |||| |||    || ||||||||||| |||||| | ||||||||||||||||||   ||||| |    
T  30775165 tcaatgtcttgaaataaattatctatctcaacaaatgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaag 30775264  T
Q  257 ctcttggattcccacttatgtccaccttattcttc 291  Q
    |||||||||||||  | |||||||| || ||||||    
T  30775265 ctcttggattcccggtaatgtccacgttgttcttc 30775299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 35132282 - 35132395
Alignment:
Q  69 gagacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctga 168  Q
    ||||||| |||| || || |||||||||||||| ||||||||   ||| ||||||||||||||||| ||  |||||||||||||||| ||||| || |||    
T  35132282 gagacaactctctacggtattcatacactcattaaaaaggtctgcattcatttcctcaaacttggcgcgattgattgatgaagaaaaatcaatgccttga 35132381  T
Q  169 aataaagaatctac 182  Q
    ||||||||||||||    
T  35132382 aataaagaatctac 35132395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 77 - 291
Target Start/End: Original strand, 28219751 - 28219965
Alignment:
Q  77 tctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaaga 176  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||| | || ||||| || | |||||||||    
T  28219751 tctcaacagttttcaaacactcattgaaaagatccatattgatttcctcaaacttagcacgagtaattgatgaaaagaaatcaatgccttcaaataaaga 28219850  T
Q  177 atctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattcccacttatg 276  Q
    ||||||||| |  |||| ||||| ||||||||| |||||||| ||||| ||||  || || |||||||||||||| ||||||||||  || ||| | |||    
T  28219851 atctacctcaatggtggcgacaacagcaaaagatagtgtcctttttgctctcttgcacgctgttctcaacctccttaaggctcttgagtttccagtaatg 28219950  T
Q  277 tccaccttattcttc 291  Q
    |||||||| ||||||    
T  28219951 tccaccttgttcttc 28219965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 291
Target Start/End: Original strand, 43744642 - 43744863
Alignment:
Q  70 agacaattctcaacagttttcatacactcattgaaaaggtccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 169  Q
    |||||| |||||||| |||||| |||||| ||||| || |||||||| |||||||||||||| | ||| ||||||| || | | || ||||| |||| ||    
T  43744642 agacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagtacgagtgattgttgtaaagaaatcaatgccctcaa 43744741  T
Q  170 ataaagaatctacctctacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttggattccc 269  Q
    |||||||||||||||| | ||||||||||| ||||||||| | |||||| ||||| || || ||||| |||||||||||||| || |||||||| || ||    
T  43744742 ataaagaatctacctcaatagtggtgacaacagcaaaagataatgtcctttttgctctttcgcatgctgttctcaacctccttaatgctcttgggtttcc 43744841  T
Q  270 acttatgtccaccttattcttc 291  Q
    | | ||||||||||| ||||||    
T  43744842 agtaatgtccaccttgttcttc 43744863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University