View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_81 (Length: 303)

Name: NF6131_high_81
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_81
NF6131_high_81
[»] chr3 (1 HSPs)
chr3 (7-303)||(44853803-44854098)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 44854098 - 44853803
Alignment:
Q  7 atgggtgtatatgattgtgactttgtagtgagttgaaagagaatgagaggaaaaattggtctcactctcaccatattttttctgccacatggtcttccct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44854098 atgggtgtatatgattgtgactttgtagtgagttgaaagagaatgagaggaaaaattggtctcactctcaccatattttttctgccacatggtcttccct 44853999  T
Q  107 atggacatgagaggtgcttttccacgaggaagagattgtttgaaaatgagatcaaacttagttattaagtatgaggaccatggaataggtttttccttgc 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44853998 atggacatgagaggtgcttt-ccacgaggaagagattgtttgaaaatgagatcaaacttagttgttaagtatgaggaccatggaataggtttttccttgc 44853900  T
Q  207 taatagagctttgaagctcacattttctaaatacatcaatggaggacaatggaaaatggactgtgagagaaaattttatataagtattttggtgtaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44853899 taatagagctttgaagctcacattttctaaatacatcaatggaggacaatggaaaatggactgtgagagaaaaaattatataagtattttggtgtaa 44853803  T

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