View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_high_82 (Length: 300)

Name: NF6131_high_82
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_high_82
NF6131_high_82
[»] chr4 (9 HSPs)
chr4 (81-284)||(829638-829841)
chr4 (154-266)||(837648-837760)
chr4 (10-106)||(6387934-6388030)
chr4 (130-203)||(10493525-10493598)
chr4 (130-193)||(6392671-6392733)
chr4 (140-192)||(10467903-10467955)
chr4 (140-192)||(10482041-10482093)
chr4 (74-110)||(8437401-8437437)
chr4 (71-107)||(10493454-10493490)
[»] chr8 (1 HSPs)
chr8 (57-178)||(21258682-21258803)
[»] chr2 (1 HSPs)
chr2 (66-110)||(25376854-25376898)
[»] chr1 (1 HSPs)
chr1 (140-192)||(50645643-50645695)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 81 - 284
Target Start/End: Complemental strand, 829841 - 829638
Alignment:
Q  81 ttgagtggtactattaacgggttggccctttgcgatcactttagtttaaagcaatatacgattctttcacttgatctttccactgagacatacactaaat 180  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  829841 ttgagcggtactattaactggttggccctttgcgatcactttggttcaaagcaatatgcgattctttcacttgatctttccactgagacatacactaaat 829742  T
Q  181 tgtggctgcctcaggtttttgttaaggagttgttctatcggccatcacttgtgggtttgatggactgtatttgcttttgtcattatgccaaatgaaggat 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  829741 tgtggctgcctcaggtttttgttaaggagttgttctatcggccatcacttgtgggtttgatggactgtatttgcttttgtcattatgccaaatgaaggat 829642  T
Q  281 tttg 284  Q
    ||||    
T  829641 tttg 829638  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 837648 - 837760
Alignment:
Q  154 atctttccactgagacatacactaaattgtggctgcctcaggtttttgttaaggagttgttctatcggccatcacttgtgggtttgatggactgtatttg 253  Q
    |||| ||| |||||||||||||| || ||| |||||||| ||||||||||||||||  |||||||| |||||||||||||  ||| |||| ||| |||||    
T  837648 atctctccgctgagacatacactcaactgttgctgcctcgggtttttgttaaggagcggttctatcagccatcacttgtgcatttaatgggctgcatttg 837747  T
Q  254 cttttgtcattat 266  Q
    |||||||||||||    
T  837748 cttttgtcattat 837760  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 6387934 - 6388030
Alignment:
Q  10 ataattcttggagatatattgaaggcttccatatgcgtccactttacaggtttaataacaatagtgtgtatttgagtggtactattaacgggttggc 106  Q
    |||||||||||||| ||||| || ||||||  |||| |||||||| ||||||||||||| || | |||||||||| || |||||||||| |||||||    
T  6387934 ataattcttggagaaatattcaatgcttccccatgcttccactttgcaggtttaataaccatggggtgtatttgaatgatactattaactggttggc 6388030  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 10493525 - 10493598
Alignment:
Q  130 agcaatatacgattctttcacttgatctttccactgagacatacactaaattgtggctgcctcaggtttttgtt 203  Q
    ||||||||  |||||||||| | |||||||||||||||||||||||| || ||| | ||||||||| |||||||    
T  10493525 agcaatatgtgattctttcagtcgatctttccactgagacatacactcaactgttgttgcctcagggttttgtt 10493598  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 6392671 - 6392733
Alignment:
Q  130 agcaatatacgattctttcacttgatctttccactgagacatacactaaattgtggctgcctca 193  Q
    ||||||||  |||||||||||| | ||| ||||||||||||||||||||||||| |||||||||    
T  6392671 agcaatatgtgattctttcactcg-tctctccactgagacatacactaaattgttgctgcctca 6392733  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 10467903 - 10467955
Alignment:
Q  140 gattctttcacttgatctttccactgagacatacactaaattgtggctgcctc 192  Q
    |||||||||||||||||| || ||||||||||||||| |||||| ||| ||||    
T  10467903 gattctttcacttgatctctcaactgagacatacactcaattgttgctacctc 10467955  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 10482041 - 10482093
Alignment:
Q  140 gattctttcacttgatctttccactgagacatacactaaattgtggctgcctc 192  Q
    |||||||||||||||||| || ||||||||||||||| |||||| ||| ||||    
T  10482041 gattctttcacttgatctctcaactgagacatacactcaattgttgctacctc 10482093  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 8437437 - 8437401
Alignment:
Q  74 tgtgtatttgagtggtactattaacgggttggccctt 110  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  8437437 tgtgtatttgaatggtactattaactggttggccctt 8437401  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 10493454 - 10493490
Alignment:
Q  71 tagtgtgtatttgagtggtactattaacgggttggcc 107  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10493454 tagtgtgtatttgagtggtactattaactcgttggcc 10493490  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 21258682 - 21258803
Alignment:
Q  57 aggtttaataacaatagtgtgtatttgagtggtactattaacgggttggccctttgcgatcactttagtttaaagcaatatacgattctttcacttgatc 156  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||| |||||||||||||| ||| | ||||||||  |||||||||| ||||||    
T  21258682 aggtttaataacaatggtgtgtatttgagtggtactattaattggttggccgtttgcgatcactttggttcagagcaatatgtgattctttcagttgatc 21258781  T
Q  157 tttccactgagacatacactaa 178  Q
    ||| ||||||||||||| ||||    
T  21258782 ttttcactgagacatacgctaa 21258803  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25376854 - 25376898
Alignment:
Q  66 aacaatagtgtgtatttgagtggtactattaacgggttggccctt 110  Q
    |||||| |||||||||||||||||||||||| | |||||||||||    
T  25376854 aacaatggtgtgtatttgagtggtactattacctggttggccctt 25376898  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 50645695 - 50645643
Alignment:
Q  140 gattctttcacttgatctttccactgagacatacactaaattgtggctgcctc 192  Q
    |||||||||||||||||| ||||| |||||||||||| || ||| ||||||||    
T  50645695 gattctttcacttgatctctccaccgagacatacactcaactgttgctgcctc 50645643  T

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