View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_high_83 (Length: 298)
Name: NF6131_high_83
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_83 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 104 - 287
Target Start/End: Original strand, 34039855 - 34040039
Alignment:
| Q |
104 |
caacgcagtactgaaaccaattagtaatacaaacaacttacacaaactgcaaaa-aatatcacacaattactactcattaaatcaagtagctttagcagt |
202 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34039855 |
caacgcaatactgaaaccaattagtaatacaaacaacttacgcaaactgcaaaaaaatatcacacaattactactcattaaatcaagtagctttagcagt |
34039954 |
T |
|
| Q |
203 |
gtgaatgaataaagcaatgttcaagatccaaatcataaaaataatttcaaagaagtggcttcctgctatcagatgcacaggttct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34039955 |
gtgaatgaataaagcaatgttcaagatccaaatcataaaaataattacaaagaagtggcttcctgctatcagatgcacaggttct |
34040039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 104 - 287
Target Start/End: Complemental strand, 42028204 - 42028021
Alignment:
| Q |
104 |
caacgcagtactgaaaccaattagtaatacaaacaacttacacaaactgcaaaaaatatcacacaattactactcattaaatcaagtagctttagcagtg |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42028204 |
caacacagtactgaaaccaattagtaatacaaacaacttacgcaaactgcaaaaaatatcacacaattactactcattaaatcaagtagctttagcagtg |
42028105 |
T |
|
| Q |
204 |
tgaatgaataaagcaatgttcaagatccaaatcataaaaataatttcaaagaagtggcttcctgctatcagatgcacaggttct |
287 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42028104 |
tgaatgaataaagcaatgtccaagatccaaatcataaaaataattacaaagaagtggcttcctcctatcagatgcacaggttct |
42028021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 104 - 287
Target Start/End: Original strand, 43102514 - 43102697
Alignment:
| Q |
104 |
caacgcagtactgaaaccaattagtaatacaaacaacttacacaaactgcaaaaaatatcacacaattactactcattaaatcaagtagctttagcagtg |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43102514 |
caacgcagtactgaaatcaattagtaatacaaacaacttacgcaaactgcaaaaaatatcacacaattactactcattaaatcaagtagctttagcagtg |
43102613 |
T |
|
| Q |
204 |
tgaatgaataaagcaatgttcaagatccaaatcataaaaataatttcaaagaagtggcttcctgctatcagatgcacaggttct |
287 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
43102614 |
tgaatgaataaagcaatgttcaatatccaaatcataaaaataattacaaagaagtgggttcctgctatcaaatgcacaagttct |
43102697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University