View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_89 (Length: 286)
Name: NF6131_high_89
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 38284550 - 38284782
Alignment:
| Q |
19 |
gtttgtagcatagaaaaaccaacaagataaagtgaaatgctata----------tataaggaagttcagggagtatttaaagttgttgatttgttttgat |
108 |
Q |
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| T |
38284550 |
gtttgcagcatagaaaaaccaacaagataaagtgaaatgctatatatatatatatataaggaaattcagggagtatttaaagttgttgatttgttttgat |
38284649 |
T |
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| Q |
109 |
tctgttgagaaggcttttggattttgggggtggcttttaaggggtttgaactagtggtgtgtagtgttgtcgcttgcctcttgatagtgtgagtgctcaa |
208 |
Q |
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| T |
38284650 |
tctgttgagaaggcttttggattttgggggtggcttttaaggggtttgaactagtggtatgtagtgttgtcgcttgcctcttgatagtgtgagtgctcaa |
38284749 |
T |
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| Q |
209 |
tttcagggagtgttcttacttcttagtaggggg |
241 |
Q |
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| T |
38284750 |
tttccgggagtgttcttacttcatagtaggggg |
38284782 |
T |
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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 2221370 - 2221520
Alignment:
| Q |
64 |
ataaggaagttcagggagtatttaaagttgttgatttgttttgattctgttgagaaggcttttggattttgggggtggcttttaaggggtttgaactagt |
163 |
Q |
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| T |
2221370 |
ataagaaagttcagggtgt--ttaaagttgtctatatgttctgattctgttgagaaggcttttggattttgcgggtggcttttaaggggtttgaac---- |
2221463 |
T |
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| Q |
164 |
ggtgtgtagtgttgtcgcttgcctcttgatagtgtgagtgctcaatttcagggagtgttctta |
226 |
Q |
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| T |
2221464 |
------tagtgttgttgcttgcctcttgacagtgtgagtgttcaattccagggtgtgttctta |
2221520 |
T |
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