View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_high_91 (Length: 282)
Name: NF6131_high_91
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_high_91 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 3826536 - 3826288
Alignment:
| Q |
20 |
actacatatgtgagttacttgctatacaagtaatcaaccaaaactaaagtatcttatttattttatgtgcatgttgtttatcaaactgatgtagttctct |
119 |
Q |
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| T |
3826536 |
actacatatgtgagttacttgctatacaagtaatcaaccaaaactaaagtatcttatttattttatgtgcatgtcgtttatcaaactgatgtagttctct |
3826437 |
T |
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| Q |
120 |
aagtaacatatgaaacattttttgcagcatttggtaaaccacgtactttaatatcagcagaagccatgtctaatagacaattgaactgtctcttacatta |
219 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
3826436 |
aagtaacatatgaaacatgttttgcagcatttggtaaaccacgtactttaatatcagcagaagccatgtctaagagacaatcgaactgtctcttacatta |
3826337 |
T |
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| Q |
220 |
gaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctat |
268 |
Q |
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| T |
3826336 |
gaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctat |
3826288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 3825796 - 3825735
Alignment:
| Q |
114 |
ttctctaagtaacatatgaaacattttttgcagcatttggtaaaccacgtactttaatatca |
175 |
Q |
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| T |
3825796 |
ttctctaagcaccatatgaaacatttgttgcagcatttggtaaaccacagacattaatatca |
3825735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 11753011 - 11753053
Alignment:
| Q |
24 |
catatgtgagttacttgctatacaagtaatcaaccaaaactaa |
66 |
Q |
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| T |
11753011 |
catatgtgagttaattgctatacaaggaatcaaccaaaactaa |
11753053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 49772070 - 49772143
Alignment:
| Q |
111 |
tagttctctaagtaacatatgaaacatttt-ttgcagcatttggtaaaccacgtactttaatatcagcagaagc |
183 |
Q |
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| T |
49772070 |
tagttctcttggtaacaaatgaaacattttattgcagcatttggtaaaccgcaggctttaatatcagaagaagc |
49772143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 49772187 - 49772255
Alignment:
| Q |
199 |
attgaactgtctcttacattagaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctat |
268 |
Q |
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| T |
49772187 |
attgaactgtcgcctaaattggaatgttcgtcaggtgagttacaa-ttagcttactaaacttcttcctat |
49772255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 16943621 - 16943663
Alignment:
| Q |
23 |
acatatgtgagttacttgctatacaagtaatcaaccaaaacta |
65 |
Q |
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| T |
16943621 |
acatatgggagttacttgttatacaagtaatcaacgaaaacta |
16943663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 17014286 - 17014328
Alignment:
| Q |
23 |
acatatgtgagttacttgctatacaagtaatcaaccaaaacta |
65 |
Q |
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||||||| |||||||||| |||||||||||||||| ||||||| |
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| T |
17014286 |
acatatgggagttacttgttatacaagtaatcaacgaaaacta |
17014328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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