View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_102 (Length: 270)
Name: NF6131_low_102
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 4235938 - 4236063
Alignment:
| Q |
25 |
cttggaatatcttctgaacttgtttacatttccaatcaaagtttatcattttgttctaagttcttgc-ctatttttctgcatttttaccttctttcactt |
123 |
Q |
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||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | || || |
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| T |
4235938 |
cttggaatatcttgtgaacttgtttgcattgc-aatcaaagtttatcattttgttctaagttcttgctctatttttctgcacttttaccttcctgcaatt |
4236036 |
T |
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| Q |
124 |
tatttccttgctctttataattctgca |
150 |
Q |
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|||||||||| |||||| ||||||||| |
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| T |
4236037 |
tatttccttgttctttacaattctgca |
4236063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 20685031 - 20685074
Alignment:
| Q |
107 |
tttaccttctttcactttatttccttgctctttataattctgca |
150 |
Q |
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| T |
20685031 |
tttaccttcttgcactttatttccttgctctttataattctgca |
20685074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 7839266 - 7839331
Alignment:
| Q |
25 |
cttggaatatcttctgaacttgtttacatttccaatcaaagtttatcattttgttctaagttcttgc |
91 |
Q |
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| T |
7839266 |
cttggaatatattgtgaacttctttacattgc-aatcaaagtttatcattttgttttaagttcttgc |
7839331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 21516508 - 21516451
Alignment:
| Q |
93 |
tatttttctgcatttttaccttctttcactttatttccttgctctttataattctgca |
150 |
Q |
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|||||||||||| |||||| ||||| || |||||||| ||| ||||||||||||||| |
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| T |
21516508 |
tatttttctgcacttttacattcttgcattttatttctttgtcctttataattctgca |
21516451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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