View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_108 (Length: 260)
Name: NF6131_low_108
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_108 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 47501413 - 47501670
Alignment:
| Q |
1 |
aaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatcaaggtgttttcgctgg |
100 |
Q |
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| T |
47501413 |
aaccaaatgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatcaaggtgttttcgctgg |
47501512 |
T |
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| Q |
101 |
tcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttacattctcgtacactgtt |
200 |
Q |
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| T |
47501513 |
tcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttacattctcgtacactgtt |
47501612 |
T |
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| Q |
201 |
gttgcctttagtatttggtgtcctgatggttggttggctaaacgtggggttattgatt |
258 |
Q |
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| T |
47501613 |
gttgcctttagtatttggtgtcctgatggttggttggctaaacgtggggttattgatt |
47501670 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 13350111 - 13349950
Alignment:
| Q |
57 |
tttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcat |
156 |
Q |
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||||| |||||||| ||| | | || |||| ||||||| |||| | |||||||||||||||||||||||||| | | |||||||||||| | ||| | |
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| T |
13350111 |
tttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatgaacttctatgctt |
13350012 |
T |
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| Q |
157 |
ggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcctttagtatttgg |
218 |
Q |
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| T |
13350011 |
ggatgatgtttgtgcctttatggctcactttctcttacacttttactgcttttagtatttgg |
13349950 |
T |
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