View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_109 (Length: 260)
Name: NF6131_low_109
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_109 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 36443224 - 36442979
Alignment:
| Q |
1 |
aagaagacatgaattcctatgctggttatgtgcgtaagaattcttttcagactttcattcttcaatgtcttctacctcatttatactaattcacatggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36443224 |
aagaagacatgaattcctatgctggttatgtgcgtaagaattcttttcagactttcattcttcaatgtcttctacctcatttatactaattcacatggga |
36443125 |
T |
|
| Q |
101 |
ctgcaaaaatgttgtcgaatctgagtggattaagtcgacctatgagggtgcttttttctaaacctcaacaatttaagtttaaaattttgtcattttatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36443124 |
ctgcaaaaatgttgtcgaatctgagtggattaagtcgacctatgagggtgcttttttctaaacctcaacaatttaagtttaaaattttgtcattttatgg |
36443025 |
T |
|
| Q |
201 |
ttatgtgttattctaaataactataggtttcagcgacatatgcatg |
246 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36443024 |
ttatgtgttattctaaataactgtaggtttcagcgacatatgcatg |
36442979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 39160607 - 39160703
Alignment:
| Q |
18 |
tatgctggttatgtgcgtaagaattcttttcagactttcattcttcaatgtcttctacctcatttatactaattcacatgggactgcaaaaatgttg |
114 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||| || || || |||||||||| |
|
|
| T |
39160607 |
tatgctggttatgtaggtaagatttcttttcagacttcaattctttgatgtcttctacttcatttatactaattcaaatagggttgtaaaaatgttg |
39160703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 32898792 - 32898836
Alignment:
| Q |
172 |
tttaagtttaaaattttgtcattttatggttatgtgttattctaa |
216 |
Q |
| |
|
|||||||||||| || | ||||||||||||||| ||||||||||| |
|
|
| T |
32898792 |
tttaagtttaaatttgtatcattttatggttatatgttattctaa |
32898836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University