View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_11 (Length: 620)
Name: NF6131_low_11
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 120 - 601
Target Start/End: Original strand, 39918352 - 39918833
Alignment:
| Q |
120 |
ttccaatcatgtccctgttttcacaaaactagcctacgttttaggcttaagagtttctccaaatcatagaagaatgggaatagggctaaaactggtagag |
219 |
Q |
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| T |
39918352 |
ttccaatcatgtccctgttttcacaaaactagcctacgttttaggcttaagagtttctccaaatcatagaagaatgggaatagggctaaaactggtagag |
39918451 |
T |
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| Q |
220 |
aaaatggaacaatggtttcgtgaaaatggtgctgagtattcttacatggctactgaaaacgacaacgttgcatcagttaaacttttcaccgacaaatgcg |
319 |
Q |
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| T |
39918452 |
aaaatggaacaatggtttcgtgaaaatggtgctgagtattcttacatggctactgaaaacgataacgttgcatcagttaaacttttcaccgacaaatgcg |
39918551 |
T |
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| Q |
320 |
gttactcaaagttccgtacaccgtcaatccttgttaaccccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacacc |
419 |
Q |
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| T |
39918552 |
gttactcaaagttccgtacaccgtcaatccttgttaaccccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacacc |
39918651 |
T |
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| Q |
420 |
aaacgacgctgaaacactttaccgttacaaattctccaccactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaacc |
519 |
Q |
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| T |
39918652 |
aaacgacgctgaaacactttaccgttacaaattctccaccactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaacc |
39918751 |
T |
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| Q |
520 |
ttcttagccgttccaagagacggaaaatatggggccggatcatataattggtccggctccgaaagctttttaatggacccac |
601 |
Q |
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| T |
39918752 |
ttcttagccattccaagagacggaaaatatggggccggatcagataactggtccggctccgaaagctttttaatggacccac |
39918833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 39918241 - 39918303
Alignment:
| Q |
9 |
agcagagataggcaatgagacagtcggaatgatacgaggttgtatcaaaaccgttacatgcgg |
71 |
Q |
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| T |
39918241 |
agcagagataggcaatgagacagtcggaatgatacgaggttgtatcaaaaccgttacatgcgg |
39918303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 5545517 - 5545448
Alignment:
| Q |
295 |
gttaaacttttcaccgacaaatgcggttactcaaagttccgtacaccgtcaatccttgttaaccccgttt |
364 |
Q |
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| T |
5545517 |
gttaaactcttcactgaaaaatgcggttatacaaagttccgtacaccgtcaattctcgtcaaccccgttt |
5545448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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