View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_111 (Length: 258)
Name: NF6131_low_111
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_111 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33857420 - 33857515
Alignment:
| Q |
1 |
ttaaataaacatcaactagaagaagaattcatctcacaacaaaacttctccaaaccatccaaggttcttcctctgttgaagtttagttttgctcca |
96 |
Q |
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| T |
33857420 |
ttaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccatccaaggttcttcctctgttgaagtttagttttgctcca |
33857515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 33923503 - 33923408
Alignment:
| Q |
1 |
ttaaataaacatcaactagaagaagaattcatctcacaacaaaacttctccaaaccatccaaggttcttcctctgttgaagtttagttttgctcca |
96 |
Q |
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| T |
33923503 |
ttaaataaacatcaactaaaagaagaattcatctcacaacaaaacttctccaaaccatccaaggttcttcctctgttgaagtttagttttgctcca |
33923408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 33857559 - 33857592
Alignment:
| Q |
209 |
agttaggggtgagctttggaagctatttgatagt |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33857559 |
agttaggggtgagctttggaagctatttgatagt |
33857592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 33923364 - 33923331
Alignment:
| Q |
209 |
agttaggggtgagctttggaagctatttgatagt |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33923364 |
agttaggggtgagctttggaagctatttgatagt |
33923331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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