View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_120 (Length: 251)
Name: NF6131_low_120
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_120 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35250 - 35491
Alignment:
| Q |
1 |
ttgcatatcttcatctagtgaaattgataagtgggtcatgatgaggcgaatattcttgataaggagttgatagtgatgagtagtgtgcgcgggaggaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35250 |
ttgcatatcttcatctagtgaaattgataagtgggtcatgatgagacgaatattcttgataaggagttgatagtgatgagtagtgtgcgcgggaggaaaa |
35349 |
T |
|
| Q |
101 |
aggagttgtttgatagaggtaactttgttaatgagagacgggagggtgtgagcggaggatatatacctggcgacgttcattgaggaagagagtgtgaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35350 |
aggagttgtttgatagaggtaactttgttaatgagagacaggagggtgtgagcggaggatatatacctggcgacgttcattgaggaagagagtgtgaagc |
35449 |
T |
|
| Q |
201 |
cgaaactctctaagtaggctagtttgccgttgtcacctttga |
242 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35450 |
cgagactctctaagtaggctagtttgccgttgtcacctttga |
35491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University