View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_121 (Length: 249)
Name: NF6131_low_121
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_121 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 4792643 - 4792420
Alignment:
| Q |
20 |
gaacacacctttaaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaag |
119 |
Q |
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| T |
4792643 |
gaacacaactttaaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaag |
4792544 |
T |
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| Q |
120 |
ccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaac |
219 |
Q |
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| T |
4792543 |
ccaaagaactcatgctttggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaac |
4792444 |
T |
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| Q |
220 |
tttcccagttgaggcctttgctac |
243 |
Q |
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| T |
4792443 |
tttcccagttgaggcttttgctac |
4792420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 241
Target Start/End: Complemental strand, 39347815 - 39347624
Alignment:
| Q |
50 |
gtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtca |
149 |
Q |
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| T |
39347815 |
gtgagctatgatactgagataacaggttacatttcaaagaagaagattaagaaacttaaaggcgtgaaagctaaggaactcatgttatggccacctgtta |
39347716 |
T |
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| Q |
150 |
atgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaactttcccagttgaggcctttgct |
241 |
Q |
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| T |
39347715 |
atgagattactgttgatgaacaaccaactgggaagattcatttcaagagtcttgctggtatcactaagactttccctgttgaagcttttgct |
39347624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 39345589 - 39345437
Alignment:
| Q |
89 |
aagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattc |
188 |
Q |
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||||| ||||||| ||| ||||| || || | |||||||||||| | ||||||||| ||||||| |||| | | |||||| || | |||||| |||| |
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| T |
39345589 |
aagaatattaagatgcttaaaggtgttaatgttaaagaactcatgttacggcctcctatcaatgagattattgttgatgaagaaccaactggaaaaattc |
39345490 |
T |
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| Q |
189 |
acttcaagagtttagctggtatcaccaaaactttcccagttgaggcctttgct |
241 |
Q |
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| T |
39345489 |
atttcaagagttatggtggtatcaccaagactttccctgttgaagcttttgct |
39345437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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