View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_126 (Length: 247)
Name: NF6131_low_126
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_126 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 5809352 - 5809565
Alignment:
| Q |
17 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaact |
114 |
Q |
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| T |
5809352 |
caaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgtcgaggcgagaattattttatccaaact |
5809451 |
T |
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| Q |
115 |
accaaatttcccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaact |
214 |
Q |
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| T |
5809452 |
accaaatttccccaaaatctttgcaagttcattttcggtggcaccataaggcaagttctacgctaaaattacatggttacttcttttcaagccatcaact |
5809551 |
T |
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| Q |
215 |
ttacccttcgcaag |
228 |
Q |
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|||||||||||||| |
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| T |
5809552 |
ttacccttcgcaag |
5809565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 37754793 - 37754986
Alignment:
| Q |
27 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
123 |
Q |
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|||||||||| |||| ||||||| | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
37754793 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37754891 |
T |
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| Q |
124 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttac |
218 |
Q |
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| T |
37754892 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttac |
37754986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 37760767 - 37760960
Alignment:
| Q |
27 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
123 |
Q |
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|||||||||| |||| ||||||| | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
37760767 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37760865 |
T |
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| Q |
124 |
cccaaaaatctttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttac |
218 |
Q |
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| T |
37760866 |
cccaaacatctttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttac |
37760960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 37738980 - 37739142
Alignment:
| Q |
66 |
aaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcaccataa |
163 |
Q |
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|||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||| |
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| T |
37738980 |
aaataccagggccaatgtttttgtcgagggcagaattattttatccaaactaccaaatttcccaaacatctttgcaagatcattttccgtagcaccatat |
37739079 |
T |
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| Q |
164 |
ggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgca |
226 |
Q |
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| T |
37739080 |
ggcaaatttttcgctaaaagtacatggttacttcttttcctgccatcaactttacccttcgca |
37739142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 38605875 - 38605707
Alignment:
| Q |
62 |
ggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcattttcggtggcacc |
159 |
Q |
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|||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||| |
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| T |
38605875 |
ggaaaaataccagggccaatgttcttgtcgaggggagaattattttatccaaactaccaaatttcccaaacatctctgcaagttcattttccgtagcacc |
38605776 |
T |
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| Q |
160 |
ataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaag |
228 |
Q |
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||| ||||| || || ||||||| |||||||||||||||||| | ||||| ||||||||||| |||||| |
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| T |
38605775 |
atatggcaaattttttgctaaaagtacatggttacttcttttaacgccataaactttaccctccgcaag |
38605707 |
T |
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