View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_136 (Length: 242)
Name: NF6131_low_136
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_136 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42800408 - 42800169
Alignment:
| Q |
1 |
tttagataacattattatataatgagcaacatttctctgttttaatttcattactttctaattccaaagttataatatctaaaccactatgcttaatcag |
100 |
Q |
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| T |
42800408 |
tttagataacattattatataatgagcaacatttctctgttttaatttcattactttctaattccatagttataatatctaaaccactatgcttaatcag |
42800309 |
T |
|
| Q |
101 |
gttcttgcttatgaggtcactattcttctgctattgcatttgaaactatatatttatttccttataccatttgtgaaactaaagctgaaacaatcatgtt |
200 |
Q |
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| T |
42800308 |
gttcttgcttatgaggtcattattcttctgctattgcatttgaaactatatatttatttccttataccatttgtaaaactaaagctgaaacaatcatgtt |
42800209 |
T |
|
| Q |
201 |
tctccaatacatccttctgtaatgtgcccttaattctgtg |
240 |
Q |
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| T |
42800208 |
tctccaatacatccttttgtaatgtgcccttaattctgtg |
42800169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 42803386 - 42803298
Alignment:
| Q |
151 |
tatttatttccttataccatttgtgaaactaaagctgaaacaatcatgtttctccaatacatccttctgtaatgtgcccttaattctgtg |
240 |
Q |
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| T |
42803386 |
tatttattttcttataccatttgtgaaactaaggttgcaacaatcatgtttctccaatacat-tttctgtaatgtgcccttaattctgtg |
42803298 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 42803453 - 42803406
Alignment:
| Q |
13 |
tattatataatgagcaacatttctctgttttaatttcattactttcta |
60 |
Q |
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| T |
42803453 |
tattatctagtgaacaacatttctctgttttaatttcactactttcta |
42803406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 27907174 - 27907034
Alignment:
| Q |
92 |
cttaatcaggttcttgcttatgaggtcactattcttctgctattgcatttgaaactatatatttatttccttataccatttgtgaaactaaagctgaaac |
191 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||| |||||| |
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| T |
27907174 |
cttaatcaagttcttgcttatgaggtcactattcttctgctactgcatttgaaac----tatttatttccttatagcattagtgaaactaaagttgaaac |
27907079 |
T |
|
| Q |
192 |
aatcatgtttctccaatacatccttctgtaatgtgcccttaattct |
237 |
Q |
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| T |
27907078 |
aatcatgtttctccaatgcat-tttctgtaatgtgcccttaattct |
27907034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 27907241 - 27907189
Alignment:
| Q |
5 |
gataacattattatataatgagcaacatttctctgttttaatttcattacttt |
57 |
Q |
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|||||| |||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
27907241 |
gataactttatcatctaatgagcaacatttctctgttttaatttcattacttt |
27907189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 7387377 - 7387428
Alignment:
| Q |
33 |
ttctctgttttaatttcattactttctaattccaaagttataatatctaaac |
84 |
Q |
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| T |
7387377 |
ttctctgatttaatttcattactttctaattccaaagttgcaatatctaaac |
7387428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 7387428 - 7387479
Alignment:
| Q |
104 |
cttgcttatgaggtcactattcttctgctattgcatttgaaactatatattt |
155 |
Q |
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| T |
7387428 |
cttgtttatgagctcactattcttctgctactgcatttcaaactatttattt |
7387479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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