View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_139 (Length: 241)
Name: NF6131_low_139
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_139 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 47861125 - 47860888
Alignment:
| Q |
4 |
agggttgagtttttgggttaaaaaataaatagagtgtttaatctatttttataataacacaaagaagaaagggacaaaaagtctaaaccttctaggtgaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47861125 |
agggttgagtttttgggttaaaaaataaatagagtttttgatctatttttatagtaacacaaagaagaaagggacaaaaagtctaaaccttctaggtgaa |
47861026 |
T |
|
| Q |
104 |
cacaaaatgacaaaataaaaataagacttctttgtaatgttcccttttcttgcctagaattttaaggtattattgatgtaccaattccagtccttaatat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
47861025 |
cacaaaatgacaaaataaaaataagacttctttgtaatgttcccttttcttccctagaattttaaggtattattgatgtatcaattccggtccttaatat |
47860926 |
T |
|
| Q |
204 |
aagaaacaaaataaaaaatcaccaaaaccaatataatt |
241 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |
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| T |
47860925 |
aagaaacaaaataaaaaatcaccaaaatcaatataatt |
47860888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 9182895 - 9183133
Alignment:
| Q |
4 |
agggttgagtttttgggttaaaaaataaatagagtgtttaatctatttttataataacacaaagaagaaagggacaaaaagtctaaaccttctaggtgaa |
103 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
9182895 |
agggttgagtttttgggtgaaaaaataaataaagtgtttgatctatttttatactaacataaagaagaaggg--caaaaagtctaaaccttctaggtgaa |
9182992 |
T |
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| Q |
104 |
cacaaaatgacaaaataaaaataagacttcttt----gtaatgttcccttttcttgcctagaattttaaggtattattgatgtaccaattccagtcctta |
199 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
9182993 |
cacaaaatgacaaaataaaaataagacttctttaattgtaatgttcccttttttttcctagaattttaaggtattattgatgtacccattccggtcctta |
9183092 |
T |
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| Q |
200 |
atataagaaacaaaataaaaaatcaccaaaaccaatataat |
240 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9183093 |
atataagaaacaaaataaaaaatcatcaaaaccaatataat |
9183133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 46571913 - 46572156
Alignment:
| Q |
4 |
agggttgagtttttgggttaaaaaataaatagagtgtttaatctatttttataataacacaaagaagaaagggacaaaaagtctaaaccttctaggtgaa |
103 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||||||| ||||||| |
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| T |
46571913 |
agggttgagtttttgggtgaaaaaataaatagagtgtttgatctattttaatagtaacataaagaagaaggggacaaaaagtctaaacctt--aggtgaa |
46572010 |
T |
|
| Q |
104 |
cacaaaatgacaaaataaaaataagacttcttt----gtaatgttcccttttcttgcctagaattttaaggtattattgatgta-----ccaattccagt |
194 |
Q |
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| ||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||||| || ||| | || |
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| T |
46572011 |
cgcaaaatgacaaaataaaaataagacttctttaattgtaatattccctttt-ttccctagaattttaaggtattattgatgtattgtacccatttcggt |
46572109 |
T |
|
| Q |
195 |
ccttaatataagaaacaaaataaaaaatcaccaaaaccaatataatt |
241 |
Q |
| |
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|| ||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
46572110 |
ccataatataagaaacaaaaccaaaaatcatcaaattcaatataatt |
46572156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 52336476 - 52336718
Alignment:
| Q |
1 |
caaagggttgagtttttgggttaaaaaataaatagagtgtttaatctatttttataataacacaaagaagaaagggacaaaaagtctaaaccttctaggt |
100 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
52336476 |
caaagggttgagtttttgggtgagaaaataaatagagtgtttgatctatttttatactaacacaaagaagaaggggacaaaaagtctaaaccttctagat |
52336575 |
T |
|
| Q |
101 |
gaacacaaaatgacaaaataaaaataagacttct----ttgtaatgttcccttttcttgcctagaattttaaggtattattgatgtaccaattccagtcc |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||| |||| ||| |
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| T |
52336576 |
gaacacaaaatgacaaaataaaaataagacttctttaattgtaatgttccctctt-tttcctagaattttaaggtattattgatgtacccattctgatcc |
52336674 |
T |
|
| Q |
197 |
ttaatataagaaacaaaataaaaaatcaccaaaaccaatataat |
240 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
52336675 |
ttaatataagaaacaaaataaaaaattatcaaaaccaatataat |
52336718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 28364306 - 28364069
Alignment:
| Q |
4 |
agggttgagtttttgggttaaaaaataaatagagtgtttaatctatttttataataacacaaagaagaaagggacaaaaagtctaaaccttctaggtgaa |
103 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28364306 |
agggttgagtttttgggtgaaaaaataaatag--tgtttgatctatttttatactaacacaaagaagaaggggacaaaaagtctaaaccttctaggtgaa |
28364209 |
T |
|
| Q |
104 |
cacaaaatgacaaaataaaaataagacttct----ttgtaatgttcccttttcttgcctagaattttaaggtattattgatgtaccaattccagtcctta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||||||||||||| ||| | ||||||| |
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| T |
28364208 |
cacaaaatgacaaaataaaaataagacttctttaattgtaattttccctttt-ttccctagaattttaaggtattattgatgtacccattacggtcctta |
28364110 |
T |
|
| Q |
200 |
atataagaaacaaaataaaaaatcaccaaaaccaatataat |
240 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| |
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| T |
28364109 |
atataagaaacaaaatcaaaaatcatcaaaaccaatataat |
28364069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 43594024 - 43594264
Alignment:
| Q |
4 |
agggttgagtttttgggttaaaaaataaatagagtgtttaatctatttttataataacacaaagaagaaagggacaaaaagtctaaaccttctaggtgaa |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
43594024 |
agggttgagtttttgggtgaaaaaataaataaagtgtttgatctatttttatagtaacccaaagaagaaggggacaaaaagtctaaaccttctaggtgaa |
43594123 |
T |
|
| Q |
104 |
cacaaaatgacaaaataaaaataagacttct----ttgtaatgttcccttttcttgcctagaattttaaggtattattgatgtaccaattccagtcctta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||| ||| | | ||||| |
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| T |
43594124 |
cacaaaatgacaaaataaaaataagacttctttaattgtaatgttccctttttttccttagaattttaaggtattattgatgtacccatttcggacctta |
43594223 |
T |
|
| Q |
200 |
atataagaaacaaaataaaaaatcaccaaaaccaatataat |
240 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||||| |
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|
| T |
43594224 |
atataagaaacaaaataaaaaattatcaaaactaatataat |
43594264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 43442565 - 43442329
Alignment:
| Q |
7 |
gttgagtttttgggttaaaaaataaatagagtgtttaatctatttttataataacacaaagaagaaagggacaaaaagtctaaaccttctaggtgaacac |
106 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||| | |||||||||| ||||||||||| ||| |||||| |
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| T |
43442565 |
gttgagtttttgggtgaaaaa-taaatagagtgtttgatctatttttatagtaacacaaagaaggaggggacaaaaaatctaaaccttcaaggcgaacac |
43442467 |
T |
|
| Q |
107 |
aaaatgacaaaataaaaataagacttct----ttgtaatgttcccttttcttgcctagaattttaaggtattattgatgtaccaattccagtccttaata |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |||||| || |||||||||||||||||||| ||||||||| |||| |||||||||| |
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|
| T |
43442466 |
aaaatgacaaaataaaaataagacatctttaattgtaatgtttcctttttttccctagaattttaaggtattactgatgtacccattctggtccttaata |
43442367 |
T |
|
| Q |
203 |
taagaaacaaaataaaaaatcaccaaaaccaatataat |
240 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
43442366 |
taagaaacaaaatcaaaaatcatcaaaaccaatataat |
43442329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 21795053 - 21795006
Alignment:
| Q |
193 |
gtccttaatataagaaacaaaataaaaaatcaccaaaaccaatataat |
240 |
Q |
| |
|
||||||| ||||||||||||||| ||||| || ||||||||||||||| |
|
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| T |
21795053 |
gtccttattataagaaacaaaatcaaaaaacatcaaaaccaatataat |
21795006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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