View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6131_low_142 (Length: 240)

Name: NF6131_low_142
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6131_low_142
NF6131_low_142
[»] chr8 (11 HSPs)
chr8 (19-195)||(38543408-38543583)
chr8 (149-195)||(38544328-38544374)
chr8 (147-194)||(10500953-10501000)
chr8 (126-196)||(788025-788095)
chr8 (196-233)||(28520982-28521019)
chr8 (126-193)||(31694164-31694231)
chr8 (148-195)||(40647180-40647227)
chr8 (147-196)||(5873163-5873213)
chr8 (146-195)||(5875180-5875229)
chr8 (147-196)||(10501912-10501961)
chr8 (155-195)||(35885336-35885376)
[»] chr5 (6 HSPs)
chr5 (143-196)||(1282253-1282306)
chr5 (129-195)||(1282949-1283015)
chr5 (155-195)||(30002864-30002904)
chr5 (155-195)||(42310849-42310889)
chr5 (129-195)||(6353684-6353750)
chr5 (127-165)||(32943547-32943585)
[»] chr4 (7 HSPs)
chr4 (126-195)||(5825334-5825403)
chr4 (147-198)||(24471827-24471878)
chr4 (146-195)||(35428158-35428207)
chr4 (126-165)||(33370854-33370893)
chr4 (127-165)||(33369939-33369977)
chr4 (145-197)||(17978261-17978313)
chr4 (147-195)||(38320420-38320468)
[»] chr3 (8 HSPs)
chr3 (146-194)||(51492456-51492504)
chr3 (146-195)||(42146800-42146848)
chr3 (146-195)||(42147547-42147596)
chr3 (147-195)||(7359842-7359890)
chr3 (147-195)||(46580364-46580412)
chr3 (147-197)||(23379330-23379380)
chr3 (149-195)||(50306525-50306571)
chr3 (148-196)||(53714486-53714534)
[»] scaffold0016 (1 HSPs)
scaffold0016 (146-195)||(67247-67296)
[»] chr7 (6 HSPs)
chr7 (146-195)||(9378729-9378778)
chr7 (147-187)||(34996885-34996925)
chr7 (126-165)||(32548652-32548691)
chr7 (146-196)||(9379794-9379844)
chr7 (146-195)||(34853333-34853382)
chr7 (147-195)||(36661685-36661733)
[»] chr1 (11 HSPs)
chr1 (129-194)||(4124701-4124766)
chr1 (143-196)||(4125413-4125466)
chr1 (146-195)||(15374696-15374745)
chr1 (149-195)||(15373957-15374003)
chr1 (146-195)||(46358608-46358657)
chr1 (146-195)||(51610220-51610269)
chr1 (143-195)||(49959954-49960006)
chr1 (149-195)||(3788435-3788481)
chr1 (146-195)||(51977197-51977246)
chr1 (148-196)||(13536997-13537045)
chr1 (129-165)||(31788258-31788294)
[»] chr2 (5 HSPs)
chr2 (126-195)||(9371821-9371890)
chr2 (155-196)||(42946477-42946518)
chr2 (149-195)||(26021913-26021959)
chr2 (145-197)||(2992000-2992052)
chr2 (147-195)||(5505220-5505268)
[»] chr6 (1 HSPs)
chr6 (149-195)||(3802812-3802858)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 38543583 - 38543408
Alignment:
Q  19 ttaattttgtgagttgaagattgaatgtgaaatggcattgaacgagagagacaatgttagaagatgatggaaaaataatctaatattgacgatacacaat 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||| |||||||| ||||||||    
T  38543583 ttaattttgtgagttgaagattgaatgtgaaatgacattgaacgagagagacggtgttagaagataatggaaaaataatctagtattgacggtacacaat 38543484  T
Q  119 aagacagttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||| |||||||||  ||||||||||||||| ||||||||||||| |||| | |||| ||||| |||||||||||    
T  38543483 aagacaattgatctaagagttagcattaacttt-ccatggtgggaaattcttacccatttccaccttaaatgccacc 38543408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 38544328 - 38544374
Alignment:
Q  149 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  38544328 tttcccatggtggaaaaatatttctcattcccaccctaaatgccacc 38544374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 10501000 - 10500953
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccac 194  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||    
T  10501000 actttcccatggtggaaaaatcttttccattcccaccctaaatgccac 10500953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 788095 - 788025
Alignment:
Q  126 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    ||||||||||||| || |  |||||| | ||||||||||| | |||| |||||||||||||||||||||||    
T  788095 ttgatctaatggtcagaaaaaactttgctatggtgggaaactttttcccattcccaccctaaatgccacca 788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 28520982 - 28521019
Alignment:
Q  196 aaatgattgatgtgaatggtaaattcttcttctctctc 233  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28520982 aaatgattgatgtgaatggtaaatgcttcttctctctc 28521019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 31694231 - 31694164
Alignment:
Q  126 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgcca 193  Q
    |||||||||| ||||   |||||||||| |||||||||||||||| | | | ||||||||||||||||    
T  31694231 ttgatctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatgcca 31694164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 40647180 - 40647227
Alignment:
Q  148 ctttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||||| |||||||||||||| | ||||||||||||| ||||    
T  40647180 ctttcccatggtaggaaaatctttctcctacccaccctaaatggcacc 40647227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 5873213 - 5873163
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccct-aaatgccacca 196  Q
    |||||||||| || ||||| ||||||||||||||||||| |||||||||||    
T  5873213 actttcccatagttggaaactctttctcattcccaccctaaaatgccacca 5873163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 5875180 - 5875229
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||| |||| ||| |||| | ||||||||||||||||||||||    
T  5875180 aactttcccatagtggaaaactcttccccattcccaccctaaatgccacc 5875229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 10501912 - 10501961
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    ||||||||||||| | |||||||||  | |||||||||||||||||||||    
T  10501912 actttcccatggtagaaaaatcttttcccttcccaccctaaatgccacca 10501961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 35885376 - 35885336
Alignment:
Q  155 atggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||| |||||  ||||||||||||||||||||||    
T  35885376 atggtgggaaactcttttccattcccaccctaaatgccacc 35885336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 1282306 - 1282253
Alignment:
Q  143 attaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  1282306 attaactttcccatagtgggaaactctttcccattcccaccctaaatgccacca 1282253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 1282949 - 1283015
Alignment:
Q  129 atctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||| || |  ||||||||||| |||||||| |||||| ||||||||||||||||| ||||    
T  1282949 atctaatggtcagaaaaaactttcccatagtgggaaactctttcccattcccaccctaaatgtcacc 1283015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 30002904 - 30002864
Alignment:
Q  155 atggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  30002904 atggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 42310889 - 42310849
Alignment:
Q  155 atggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  42310889 atggtgggaaactctttcccattcccaccctaaatgccacc 42310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 6353750 - 6353684
Alignment:
Q  129 atctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||||  ||| ||||||| ||| |||||||||||||| |   ||||||||||||||||||    
T  6353750 atctaatggttaaaatttactttcctatgatgggaaaatctttccctcacccaccctaaatgccacc 6353684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 32943585 - 32943547
Alignment:
Q  127 tgatctaatggttagcattaactttcccatggtgggaaa 165  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  32943585 tgatctaatggctaacattaactttcccatggtgggaaa 32943547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 5825403 - 5825334
Alignment:
Q  126 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||||||||| |  |||||| | ||||||||||| |||||| ||||||||||||||||||||||    
T  5825403 ttgatctaatggttagaaaaaactttgctatggtgggaaactctttcccattcccaccctaaatgccacc 5825334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 24471878 - 24471827
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaaa 198  Q
    ||||||| ||||||||||| |||||  |||||||||||||||||||||||||    
T  24471878 actttcctatggtgggaaactcttttccattcccaccctaaatgccaccaaa 24471827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 35428158 - 35428207
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||| |||||||| |||| | ||||||||||||||||||||||    
T  35428158 aactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 35428207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 33370854 - 33370893
Alignment:
Q  126 ttgatctaatggttagcattaactttcccatggtgggaaa 165  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  33370854 ttgatctaatggctaacattaactttcccatggtgggaaa 33370893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 33369977 - 33369939
Alignment:
Q  127 tgatctaatggttagcattaactttcccatggtgggaaa 165  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  33369977 tgatctaatggctaacattaactttcccatggtgggaaa 33369939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 17978313 - 17978261
Alignment:
Q  145 taactttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaa 197  Q
    ||||||||||||| ||||||| |||||| |   ||||||||||||||||||||    
T  17978313 taactttcccatgttgggaaactctttcccccgcccaccctaaatgccaccaa 17978261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 38320468 - 38320420
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||| |||||||||| ||||||   ||||||||||||||||||||    
T  38320468 actttcccgtggtgggaaactctttcctcttcccaccctaaatgccacc 38320420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 51492456 - 51492504
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccac 194  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  51492456 aactttcccatggtgggaaaatctttctccatcccaccctaaatgccac 51492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 42146848 - 42146800
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  42146848 aactttcccatggtgggaaaatctttccca-tcccaccctaaatgccacc 42146800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 42147547 - 42147596
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  42147547 aacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 42147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 7359842 - 7359890
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||||||||||| |||| ||| | ||||||||||||||||||    
T  7359842 actttcccatggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 46580412 - 46580364
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||| ||||||| |||||||||||||| | ||||||||||||||||||    
T  46580412 acttttccatggtaggaaaatctttctcctacccaccctaaatgccacc 46580364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 23379380 - 23379330
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaa 197  Q
    ||||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  23379380 actttcctatagtgggaaaatctttcccttacccaccctaaatgccaccaa 23379330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 50306525 - 50306571
Alignment:
Q  149 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  50306525 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 53714534 - 53714486
Alignment:
Q  148 ctttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    |||||||||||||||||| |||||| |   |||||||||||||||||||    
T  53714534 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 53714486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 67296 - 67247
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  67296 aacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 67247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 9378778 - 9378729
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  9378778 aactttcccatggtggaaaaatctttccccttcccaccctaaatgccacc 9378729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 34996925 - 34996885
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaa 187  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  34996925 actttcccatagtgggaaactctttctcattcccaccctaa 34996885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 32548652 - 32548691
Alignment:
Q  126 ttgatctaatggttagcattaactttcccatggtgggaaa 165  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  32548652 ttgatctaatggctaacattaactttcccatggtgggaaa 32548691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 9379794 - 9379844
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    ||||||||||| |||| |||||||||| |  ||||||||||||||||||||    
T  9379794 aactttcccatagtggaaaaatctttccccatcccaccctaaatgccacca 9379844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 34853333 - 34853382
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||| ||||||||||| |||| ||| | ||||||||||||||||||    
T  34853333 aactttcctatggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 36661733 - 36661685
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||||||||||| |||||| |   ||||||||||||||||||    
T  36661733 actttcccatggtgggaaattctttccctcacccaccctaaatgccacc 36661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 4124766 - 4124701
Alignment:
Q  129 atctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccac 194  Q
    |||||||||| || |  ||||||||||| |||||||| |||||| |||||||||||||||||||||    
T  4124766 atctaatggtcagaaaaaactttcccatagtgggaaactctttcccattcccaccctaaatgccac 4124701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 4125413 - 4125466
Alignment:
Q  143 attaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    ||||||||||| || |||||||| |||||| |||||||||||||||||||||||    
T  4125413 attaactttcctatagtgggaaactctttcccattcccaccctaaatgccacca 4125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 15374696 - 15374745
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  15374696 aacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 15374745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 15374003 - 15373957
Alignment:
Q  149 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||    
T  15374003 tttcccatggtgggaaaatctttccccatcccaccctaaatgccacc 15373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 46358608 - 46358657
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||||||    
T  46358608 aactttcccatggtgggaaaatcttttcccatcccaccctaaatgccacc 46358657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 51610220 - 51610269
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||||||||||||||| || ||| | ||||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 49960006 - 49959954
Alignment:
Q  143 attaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||| || || ||||| ||||||||||| |||||||||||||||||    
T  49960006 attaactttcctatagtaggaaactctttctcatttccaccctaaatgccacc 49959954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 3788481 - 3788435
Alignment:
Q  149 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  3788481 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 51977197 - 51977246
Alignment:
Q  146 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||| |||| ||| |||||| |||| |||||||||||||||||    
T  51977197 aactttcccatagtggaaaactctttcccatttccaccctaaatgccacc 51977246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 13536997 - 13537045
Alignment:
Q  148 ctttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    |||||||||||||||||| |||||| |   |||||||||||||||||||    
T  13536997 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 13537045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 31788258 - 31788294
Alignment:
Q  129 atctaatggttagcattaactttcccatggtgggaaa 165  Q
    ||||||||||||  |||||||||||||||||||||||    
T  31788258 atctaatggttaaaattaactttcccatggtgggaaa 31788294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 9371821 - 9371890
Alignment:
Q  126 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||||||||||   |||| ||||| |||||||||||||||||| | |||||||| ||||| |||||    
T  9371821 ttgatctaatggttaaatttaattttcctatggtgggaaaatctttcccgttcccaccttaaataccacc 9371890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 42946477 - 42946518
Alignment:
Q  155 atggtgggaaaatctttctcattcccaccctaaatgccacca 196  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  42946477 atggtgggaaactctttcccattcccaccctaaatgccacca 42946518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 26021913 - 26021959
Alignment:
Q  149 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  26021913 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 2992052 - 2992000
Alignment:
Q  145 taactttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaa 197  Q
    ||||||||||||| ||||||| |||||| |   ||||||||||||||||||||    
T  2992052 taactttcccatgttgggaaactctttcccccgcccaccctaaatgccaccaa 2992000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 5505220 - 5505268
Alignment:
Q  147 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    ||||||||||||||| ||| ||||||   ||||||||||||||||||||    
T  5505220 actttcccatggtggaaaactctttcctcttcccaccctaaatgccacc 5505268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 3802812 - 3802858
Alignment:
Q  149 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 195  Q
    |||||||| ||| |||| |||||| ||||||||||||||||||||||    
T  3802812 tttcccatagtgagaaattctttcccattcccaccctaaatgccacc 3802858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University