View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6131_low_143 (Length: 239)
Name: NF6131_low_143
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_143 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 11613272 - 11613493
Alignment:
| Q |
18 |
aaactgctgtcattgattatatggttaaattttaagcacttcttgacactcttgtttgtgcctgcatattggatttcattgatttcatggttttctgact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11613272 |
aaactgctgtcattgattatatggttaaattttaagcacttcttgacactcttgtttgtgcctgcatattggatttcattgatttcatggttttctgact |
11613371 |
T |
|
| Q |
118 |
tgtgcatttgttcctttgtcattgattttacatgtcacagatataggtggttaagtttggattgctgaatattaaagggaagtttaattttggttgtcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11613372 |
tgtgcatttgttcctttgtcattgattttacatgtcacagagataggtggttaagtttggattgctgaatattaaagggaagttcaattttggttgtcaa |
11613471 |
T |
|
| Q |
218 |
agattgtgaagggacttgaatt |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11613472 |
agattgtgaagggacttgaatt |
11613493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University