View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6131_low_145 (Length: 238)
Name: NF6131_low_145
Description: NF6131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6131_low_145 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38808804 - 38809025
Alignment:
| Q |
1 |
caagttttgttgcaatatcaagattcttttaattgtatcagtcacatttatatgtaatttacaaattaggctgatatggacatcatacatttaaatggaa |
100 |
Q |
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| T |
38808804 |
caagttttgttgcaatatcaagattcttttaattgtatcagtcacatttatatgtaatttacaaattaggctgatatggacatcatacatttaaatggaa |
38808903 |
T |
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| Q |
101 |
catcatacacactgctacactttcattttattatagttttttgtttgacttaatttatagatatgcatcttaggagaatattccaattaacatcaataga |
200 |
Q |
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| T |
38808904 |
catcatacacattgctacactttcattttattatagttttttgtttgacttaatttataaatatgcatcttaggagaatattccaattaacatcaataga |
38809003 |
T |
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| Q |
201 |
aaatattgcaaaatcaaaaaag |
222 |
Q |
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| T |
38809004 |
aaatattgcaaaatcaaaaaag |
38809025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 38821928 - 38821981
Alignment:
| Q |
161 |
atatgcatcttaggagaatattccaattaacatcaatagaaaatattgcaaaat |
214 |
Q |
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| T |
38821928 |
atatgcatcttagaagaatattccaattgacatcaataacaaagattgcaaaat |
38821981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 35521775 - 35521721
Alignment:
| Q |
168 |
tcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaag |
222 |
Q |
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| T |
35521775 |
tctttggagaatattccaattgacattgatagcaaatatttcaaaatcaaaaaag |
35521721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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